 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
NNU_016667-RA |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
Family |
bHLH |
Protein Properties |
Length: 360aa MW: 39745.8 Da PI: 8.2394 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
NNU_016667-RA | genome | CAS | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 39 | 1.5e-12 | 169 | 216 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq
NNU_016667-RA 169 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 216
5699************************.....9******************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MEDPAFIHEC QMDSFDGFST QQIAATLGQD FQHSFSSESF SSYPTFKTRS NTATPTTAFS 60 GSSMDASHTG VERPAKQIKT NSWNSCTTEN ISSTPEASSS PNILSFGNPN LPINQAQQLY 120 GNLMGNMDEA VSSANMIFPS YVTQNYVFKP GHGTKRMNSA TTKPPSHTQD HIIAERKRRE 180 KLSQRFIALS AIVPGLKKMD KASVLGDAIK YLKQLQERVK ILEEQTVKKR VESVVLVKRS 240 QISADDDNSS SDENNLGGGR SDDEAALPEI EARVSDKDVL IRVHSEKQKG VVAKALAEIE 300 KLHLTVVNSS VIPFGKSALN ITIVAVMEPE FSMKVKDLVR HLNSAFRQFI RLVDRVYVGQ
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 5e-14 | 170 | 219 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 5e-14 | 170 | 219 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 5e-14 | 170 | 219 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 5e-14 | 170 | 219 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 5e-14 | 170 | 219 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 5e-14 | 170 | 219 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 5e-14 | 170 | 219 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 5e-14 | 170 | 219 | 8 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 174 | 179 | ERKRRE |
2 | 175 | 180 | RKRREK |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |