PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

NNU_016626-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

DBB

Protein Properties

Length: 304aa MW: 33912.2 Da PI: 6.7145

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016626-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.9	3.6e-07	4	34	5	35
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ +++ e++ fC ++ lC+ C H+ NNU_016626-RA 4 QCDVCDKDEASVFCSADEAALCDGCDRRVHH 34 7****99***************99974 PP
2	zf-B_box	24.6	5.2e-08	54	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 e+++C+ ++e ++ lfC++++ lC++C +H Ht NNU_016626-RA 54 EAPRCDVCQERRAFLFCQEDRAILCRECDHPIHTAndHT 92 689******************************546776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.296	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	6.81E-5	3	33	No hit	No description
SMART	SM00336	1.7E-5	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.5E-14	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.296	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.6E-6	54	93	IPR000315	B-box-type zinc finger
CDD	cd00021	3.06E-9	56	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009641	Biological Process	shade avoidance
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MKIQCDVCDK DEASVFCSAD EAALCDGCDR RVHHANKLAG KHLRFSLLHP SFKEAPRCDV 60 CQERRAFLFC QEDRAILCRE CDHPIHTAND HTKKHNRFLL TGVKLSSSSS LYSATNSSTN 120 EACDSLNGKV NENKISKLSK KQKPMPVPFG EIVHPKPPMV EKPPAAATIT TSKADDHPAS 180 EGYSTSSITE YLMETLPGWQ VEDFLDSYSA PHGFCKGDAL SPFLDMDFQS NLSFSPQDTT 240 IWVPQVPQAS YPVNCLPNQI SFLSGFKELK EASNFKTSNK RWRDDSLTVP QISSPSCERS 300 TPFW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271506.1	0.0	PREDICTED: B-box zinc finger protein 20-like isoform X1
TrEMBL	A0A1U8AUB8	0.0	A0A1U8AUB8_NELNU; B-box zinc finger protein 20-like isoform X1
STRING	XP_010271505.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	2e-77	salt tolerance homolog2