PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016191-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family SBP
Protein Properties Length: 1508aa    MW: 168239 Da    PI: 7.0734
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016191-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.51.2e-40160237178
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    +Cqv gC adls+ak+yhrrhkvC++hska+++lvs+++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  NNU_016191-RA 160 VCQVVGCGADLSNAKDYHRRHKVCDMHSKASKALVSNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 237
                    6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-32155222IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.129158235IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-37159240IPR004333Transcription factor, SBP-box
PfamPF031102.1E-29161234IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.206.3E-7777936IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.41E-8777925IPR020683Ankyrin repeat-containing domain
CDDcd002044.66E-7813924No hitNo description
Gene3DG3DSA:1.25.40.106.0E-511311242IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.85211541188IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.8E-611571189IPR002885Pentatricopeptide repeat
PfamPF015350.005611611186IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.94411891219IPR002885Pentatricopeptide repeat
PfamPF130411.3E-1211911236IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.0E-511921226IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.9512251259IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.5E-612271261IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.41612601295IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.8E-512621297IPR002885Pentatricopeptide repeat
PfamPF015350.01712651290IPR002885Pentatricopeptide repeat
PfamPF130414.6E-812951343IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.93112961330IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.68113311365IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.106.0E-513341466IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007566.1E-513341365IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.53613661400IPR002885Pentatricopeptide repeat
PfamPF130414.0E-713671414IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.3E-413691401IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.6114011435IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.35614361470IPR002885Pentatricopeptide repeat
PfamPF130411.0E-1014361482IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.2E-714401472IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.76114711506IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1508 aa     Download sequence    Send to blast
METKIGGDFH HFYGPSASDF MLKEKDLLGV GKKSLEWDLN DWRWDGDLFI ANPLNSVPSD  60
CRSRQLFPGS SGIPTAGGSS NSSSSCSDEI NPGSDKGNRE LEKKRRVIVV ENEDLNDEVG  120
SLTLKLGGHG YPVVEGDISN WDGKNGKKTK LLGTTSNRAV CQVVGCGADL SNAKDYHRRH  180
KVCDMHSKAS KALVSNVMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNR RRRKTHPDAA  240
ANGSSLSDDR ASSYLLISLL RILSNMHSNS SDQTKDQDLL SHLFRSLANI AGTLDGRNIS  300
GLLRESQDLL NVATSVGTSS EKVSPPLVNG IESTVPVGST SKINRNGAEG PEVRPLDQFF  360
SASAADLPQK GMTTADVRVG TLQAGSLPKS TTVIPIKDSH LAKAEVTQST VGRIKLNNID  420
LNNIYNDSQD CIEDMEGSQA PVVDFPSWMQ QDSHQSSPPQ ASGNSDSVSA QSPSSSSGDT  480
QSRTDRIVFK LFGKDPNDFP LVLRAQILDW LSHSPTDMES YIRPGCIILT VYLRLPNSTW  540
EDICCDLSLC LRRLLDASDD TFWTTGWVYT RVQHQIAFVY NGQIVLNTSL PLKNHSHCRI  600
SSIAPIAVSS FEKAEFIVKG LNLSWPTTRL LCAVDGKYLV QEATHDLVEA TETSKEYDEI  660
QCLRFHCSLP DVIGRGFIEV EDHGLSSSFF PFIVAEQDVC SEIRMLEGVI EAAECENGVQ  720
GGGGKIEAKN QALDFIHEMG WLLHRTHVRS RLGHMDPNLD AFSFRRFRWI MEFSIDHGWC  780
AVVKKLLDIV FKGNVDVDEH PSVEFALSEM GILHRAVRRN CRPLVELLLR YKPEKVSDEA  840
GSEHNQQGGR ANDGFLFRPD AIGPAGLTPL HAAASRDGNE NVLDALTDDP GMVGVEAWKS  900
ARDSTGFTPE DYARLRGHYS YIHLVYKKVK KPEAGHVVLD IPGIISECTN NQKQIDGLEL  960
AKETRFHIDK TKLGMIRRHC KICDQQLTYS STSRSLVYKP AMLSMVAIAA VCVCVALLFK  1020
SSPEGMKNKA IAEPDLSRAF RCAFASPVRK GNASKSSSSS SSPVRTPGFK HTPPVKKRHW  1080
KEGEFPGISD ASFPSSSNRT PLKNVKKKMD NKNKAKAWAN TVTEALADRI QKKLWEDALQ  1140
VFEMLKEQPF YQPKEGTYMK ILVLLGKSGQ PQRAHQLFDE MVKEGCEPTS ELYTALLAAY  1200
CRNNLLDEAF LILNQMKTLP RCQPDVYTYS TLIKACVDAS QFDLVDSLYE DMADRSITPN  1260
TVTQNIVLSG YGKVGKFDQM EKVLLKMLES TTCKPDVWTM NTIISLFGNK GQIEMMERWY  1320
EKFRNFGIEP ETRTFNILIG AYGKKRMYDK MSSVMEYMRK LSFPWTTSTY NNVIEAFADV  1380
GDAKNMEYTF DQMRAEGMKA DTKTFCCLIN GYANAGLFHK VVSSVQLAGK LEIPENTSFY  1440
NSVISACAKA EDLIEMERVY KRMKDKHCQP DSSTFSIMVE AYRKEGMTDK IFDLEQEKMV  1500
IANYLKDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9g_C4e-45113515072445pentatricopeptide repeat protein dPPR-U8C2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270965.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A1U8AT070.0A0A1U8AT07_NELNU; squamosa promoter-binding-like protein 1
STRINGXP_010270965.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]