PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

NNU_015359-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HB-other

Protein Properties

Length: 971aa MW: 107086 Da PI: 8.5278

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_015359-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.3	9.6e-07	61	117	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++lF + ++s++e +e+++ +g+t qV+ +F +R + +k NNU_015359-RA 61 KRPRDLLNPKAVKYMQSLFSIKDTISKKESREISALCGVTVMQVREFFAGQRSRVRK 117 799**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.313	58	118	IPR001356	Homeobox domain
SMART	SM00389	3.8E-4	60	122	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.27E-6	60	120	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.8E-6	61	123	IPR009057	Homeodomain-like
CDD	cd00086	5.00E-4	61	117	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence Send to blast
MEACMENSTN TFQMFVESQK ELFDEQIDQL QKIVVRQCKL TGANPLSQEM AAGALSIKIG 60 KRPRDLLNPK AVKYMQSLFS IKDTISKKES REISALCGVT VMQVREFFAG QRSRVRKLVQ 120 LSKEKVVRSN AGMASHDGCS TNSNHVMPIS PVPLNSVDPK TVEEAPSCSS QDETIPDIDN 180 SDKNFLENIF NLMRKEETFS GQVKLMEWIL QIQNSSVLYW FLTKDGLMIL ATWLSQAALE 240 EQTTVLLVIL KVLCHLPLHK ALPVHMSAIL QTVNRLRIGE ILSDEVQGQI LSLTSGSSEV 300 GRESESYRAL KLLPASADDS NRRHTRIVSL PQTRERRRVL LVEQPGQKTG GRNQQGAKVV 360 TAIQGRPMSA DDIQKAKMRA TFLQSKYGKT GSPSKHSLLQ RTEDPVKSSA SQTSNSQSID 420 KTPIRSKVEE DTKSTVLGSK NSPIMLKTPV DLKPSLELRV PPEESLKRGQ IPWQTPPELR 480 INGLWGIGAG EKSKEVEIQT ERLRREKETF YHNIQDIPIN PKEPWDLEID YDDTLTPEIP 540 IEQLPDDDAA SLPSPCQNNG DKSATTPVGT NNGSAPEPDL ELLAVLLKNP ELVFALTSGQ 600 CGNLTSEETV KLLDMIKASG IGLPGGLNGS SGKAEQKLEI TSLPSPTPPS ERRMSAWRSE 660 GTKSLLQPPV PATKGGGSGF PAVPATVSLL ENPPATTSVR PQLPTTVITS QIPTVITQLS 720 QQLLPALQPS SSQQTLAAGM PENQLTAMNP SPNQRLLSSP LLPMTHIPVT CPPSQNLHAS 780 SPLLRPETSS IGQMHNLNSA TVSIVLNPPN ERQLVSVPQL PPLLPTPTRP QPPLLPEPPI 840 FSPSYPTMPL NASNSGKQGP FSDSTMDRQG SASNSIAHTN QSNYNAFLGQ PPLLSATRWE 900 TKEFTSEPEL EMWSPERSPM RSPEYRSGWN FTEARRDYGR NSRPDWSRHR SSGRLNRDCR 960 HGGRRWHDRR H

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence Send to blast

MEACMENSTN TFQMFVESQK ELFDEQIDQL QKIVVRQCKL TGANPLSQEM AAGALSIKIG  60
KRPRDLLNPK AVKYMQSLFS IKDTISKKES REISALCGVT VMQVREFFAG QRSRVRKLVQ  120
LSKEKVVRSN AGMASHDGCS TNSNHVMPIS PVPLNSVDPK TVEEAPSCSS QDETIPDIDN  180
SDKNFLENIF NLMRKEETFS GQVKLMEWIL QIQNSSVLYW FLTKDGLMIL ATWLSQAALE  240
EQTTVLLVIL KVLCHLPLHK ALPVHMSAIL QTVNRLRIGE ILSDEVQGQI LSLTSGSSEV  300
GRESESYRAL KLLPASADDS NRRHTRIVSL PQTRERRRVL LVEQPGQKTG GRNQQGAKVV  360
TAIQGRPMSA DDIQKAKMRA TFLQSKYGKT GSPSKHSLLQ RTEDPVKSSA SQTSNSQSID  420
KTPIRSKVEE DTKSTVLGSK NSPIMLKTPV DLKPSLELRV PPEESLKRGQ IPWQTPPELR  480
INGLWGIGAG EKSKEVEIQT ERLRREKETF YHNIQDIPIN PKEPWDLEID YDDTLTPEIP  540
IEQLPDDDAA SLPSPCQNNG DKSATTPVGT NNGSAPEPDL ELLAVLLKNP ELVFALTSGQ  600
CGNLTSEETV KLLDMIKASG IGLPGGLNGS SGKAEQKLEI TSLPSPTPPS ERRMSAWRSE  660
GTKSLLQPPV PATKGGGSGF PAVPATVSLL ENPPATTSVR PQLPTTVITS QIPTVITQLS  720
QQLLPALQPS SSQQTLAAGM PENQLTAMNP SPNQRLLSSP LLPMTHIPVT CPPSQNLHAS  780
SPLLRPETSS IGQMHNLNSA TVSIVLNPPN ERQLVSVPQL PPLLPTPTRP QPPLLPEPPI  840
FSPSYPTMPL NASNSGKQGP FSDSTMDRQG SASNSIAHTN QSNYNAFLGQ PPLLSATRWE  900
TKEFTSEPEL EMWSPERSPM RSPEYRSGWN FTEARRDYGR NSRPDWSRHR SSGRLNRDCR  960
HGGRRWHDRR H

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010269460.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS-like isoform X3
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A1U8B1L3	0.0	A0A1U8B1L3_NELNU; homeobox protein LUMINIDEPENDENS-like isoform X3
STRING	XP_010269458.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-173	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]