PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014567-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family FAR1
Protein Properties Length: 214aa    MW: 24071.2 Da    PI: 8.4728
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014567-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.33.6e-2579169190
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+r+++    +++   + ++tr gC+a+l++ +++  kw+vtk+++eH+H+l+
  NNU_014567-RA  79 EFYVAYGRRTGFTVRIHHNRRSRLNNAVIGQDFVCSKEGFRAKKYVYrKDRILPPPPVTREGCNAMLRLALRDGVKWVVTKFVKEHSHKLM 169
                    6******************************************99882233344899********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-2279169IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MMESIFGQGL DSEESNRDLQ VETFNEHQTT DSDLSKNVDL CIGGNDKFEE QSVETIPANA  60
DALEPYVGME FKSRDEAREF YVAYGRRTGF TVRIHHNRRS RLNNAVIGQD FVCSKEGFRA  120
KKYVYRKDRI LPPPPVTREG CNAMLRLALR DGVKWVVTKF VKEHSHKLMS PSKVPWRRSE  180
RILISLGSRQ ILGTVSAEAG ISGGLMESGA SSSI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268144.11e-139PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1U8AYG91e-137A0A1U8AYG9_NELNU; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_010268144.11e-138(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-27FAR1-related sequence 5