PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Basic Information? help Back to Top

TF ID

NNU_014567-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 214aa MW: 24071.2 Da PI: 8.4728

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_014567-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.3	3.6e-25	79	169	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+r+++ +++ + ++tr gC+a+l++ +++ kw+vtk+++eH+H+l+ NNU_014567-RA 79 EFYVAYGRRTGFTVRIHHNRRSRLNNAVIGQDFVCSKEGFRAKKYVYrKDRILPPPPVTREGCNAMLRLALRDGVKWVVTKFVKEHSHKLM 169 6****************************************99882233344899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-22	79	169	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MMESIFGQGL DSEESNRDLQ VETFNEHQTT DSDLSKNVDL CIGGNDKFEE QSVETIPANA 60 DALEPYVGME FKSRDEAREF YVAYGRRTGF TVRIHHNRRS RLNNAVIGQD FVCSKEGFRA 120 KKYVYRKDRI LPPPPVTREG CNAMLRLALR DGVKWVVTKF VKEHSHKLMS PSKVPWRRSE 180 RILISLGSRQ ILGTVSAEAG ISGGLMESGA SSSI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268144.1	1e-139	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1U8AYG9	1e-137	A0A1U8AYG9_NELNU; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_010268144.1	1e-138	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-27	FAR1-related sequence 5