PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

NNU_014337-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 464aa MW: 52446.4 Da PI: 8.3044

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_014337-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.6e-06	7	30	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC ++r G+C + +C+FaHg NNU_014337-RA 7 FKTKLCILYQR-GHCAR-QSCSFAHG 30 69*******.*.*****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	7.7E-9	6	36	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.061	6	32	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MLERKLFKTK LCILYQRGHC ARQSCSFAHG DAELRRFSGS FNGRRDNQSS DLRDKLDRRH 60 SPQRRYSPVR DARGRRAFRS QKQISYDRGF STSRSPAKRS KKRQKKKQYL DGQSDISGGL 120 KISEGAEDRV KEGKHGSSDS KDALEEQLKQ VQLDIDMLDD HKCQLQIDLD ERVQDAVSLS 180 SRIEELELQL SKEQEDYKRV TSKIKKFIKA HTRHSRAQEE LKRSQARLQK LGELLGSDAS 240 GPAINEEDSS INIVSDGEPN DKNRMSPKND LENQTSPTKK RRRFNLETSE EEKPATARKR 300 EGILSGKTRL EKFTRWDGPS VQSENIKEAE VVNRILTGKN GYIRPLENVS KHKRGKIGSL 360 SSASIDKVKG SELPSTSMAA HAVDELVEIT EMEKFEVLES ASNPFDKGTI DEQTGLSHLP 420 PPPPVVPQNA YKQYEGDDET VDVEALDVEA GDVDANSEVD IEQL

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MLERKLFKTK LCILYQRGHC ARQSCSFAHG DAELRRFSGS FNGRRDNQSS DLRDKLDRRH  60
SPQRRYSPVR DARGRRAFRS QKQISYDRGF STSRSPAKRS KKRQKKKQYL DGQSDISGGL  120
KISEGAEDRV KEGKHGSSDS KDALEEQLKQ VQLDIDMLDD HKCQLQIDLD ERVQDAVSLS  180
SRIEELELQL SKEQEDYKRV TSKIKKFIKA HTRHSRAQEE LKRSQARLQK LGELLGSDAS  240
GPAINEEDSS INIVSDGEPN DKNRMSPKND LENQTSPTKK RRRFNLETSE EEKPATARKR  300
EGILSGKTRL EKFTRWDGPS VQSENIKEAE VVNRILTGKN GYIRPLENVS KHKRGKIGSL  360
SSASIDKVKG SELPSTSMAA HAVDELVEIT EMEKFEVLES ASNPFDKGTI DEQTGLSHLP  420
PPPPVVPQNA YKQYEGDDET VDVEALDVEA GDVDANSEVD IEQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	105	KRSKKRQKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267784.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 13
TrEMBL	A0A1U8AXK7	0.0	A0A1U8AXK7_NELNU; zinc finger CCCH domain-containing protein 13
STRING	XP_010267784.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	3e-50	C3H family protein