PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014127-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 522aa    MW: 58101.9 Da    PI: 8.3252
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014127-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12340385454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI++L
  NNU_014127-RA 340 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVSYINEL 385
                    699***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-5329215IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.19E-17336399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.25336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-13339390No hitNo description
PfamPF000105.7E-10340385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16340395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-16342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEGIISSPTR STSPSSLLFV CQETPQKTLQ ERLRFLVQSR PEWWVYAIFW RTSNDNNGHL  60
VLAWADGLFR GTRDRASSSS RYSNRLQCQQ QKLEIDWERK KVMKGIQALI NDIPDIDASV  120
DGDVTDAEWF YMVSITRSFN IGDGLPGKAI SSGSPVWLTG AQQLRFCNCE RAKEALVHGI  180
ETLVYIPISS GVLELGSSDT IAENWGLVHQ AKSLFGSDVI SPVPVAVSLP VQERSPSQGG  240
LIPFLDRDLS FPDIGIINGE RGEGIHQERH RQEARTKKNG ETTTTITMTT APAPPATHSS  300
SVESEHFDSD ALLITSADME KRRPKKRGRK PGKGRDMPLN HVEAERQRRE KLNHRFYALR  360
SVVPNVSRMD KASLLADAVS YINELKGKIE DLEGRLGLGR HSKKVKMEMD DHQSTITTAT  420
TVFDYGQTRS SSIYGSGGLI TSMDVEVKIL GTDALIRVQS ENVNYPSARL MDALRGLKLQ  480
VHHASVSSVK ELMLQDVVIR LPDGVKSEEG LKTAILRRLE KE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-33262156192Transcription factor MYC3
4rqw_B1e-33262156192Transcription factor MYC3
4rs9_A1e-33262156192Transcription factor MYC3
4yz6_A1e-33262156192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321329RRPKKRGRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267440.10.0PREDICTED: transcription factor MYC2
TrEMBLA0A1U8AMW20.0A0A1U8AMW2_NELNU; transcription factor MYC2
STRINGXP_010267440.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-44bHLH family protein