PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014018-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 322aa    MW: 36186 Da    PI: 4.9107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014018-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.9e-11132175755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    + ErrRR+r+++++  Lr+l+P+      +K++Ka+i+  Av Y+++Lq
  NNU_014018-RA 132 ISERRRRSRMKEKLYALRSLVPNI-----TKMDKASIVGDAVLYVQELQ 175
                    57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.504125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-16126189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-13127177No hitNo description
Gene3DG3DSA:4.10.280.101.6E-16127191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-14131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-9132175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MESQAFQIPQ AQFGDSGFHD FIDDGNFEQF ISLIKGENAD PITGFNSNYD AELLFDDGFV  60
DSRQFDHTTL GDMFAFNSIS NSDPNSIFLP LPPFSGDVER SDGDGDDDST AATTTTKPKK  120
TKGVGDRSRS LISERRRRSR MKEKLYALRS LVPNITKMDK ASIVGDAVLY VQELQTQANK  180
LRAEIAELES SFKGEERYQS LXVDSPXKTK QAFAQKKHHP VCRQILKMDI FQVEERGFYV  240
RVECNKGEGV TVALYKALES LTGFHLQSSN CATVSDQRFV LTFTINVRES GEEMMNLSTL  300
KLWVAGAFLN QGFEYNNYVL SP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267235.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like isoform X2
TrEMBLA0A1U8AVI00.0A0A1U8AVI0_NELNU; transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like isoform X2
STRINGXP_010267235.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.16e-65FER-like regulator of iron uptake