PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

NNU_013980-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GATA

Protein Properties

Length: 336aa MW: 37024.9 Da PI: 6.4219

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_013980-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.2	9.3e-18	232	266	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l NNU_013980-RA 232 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 266 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	2.9E-84	18	319	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	4.7E-18	226	276	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.558	226	262	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.33E-15	227	290	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.1E-14	227	263	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.32E-14	231	278	No hit	No description
Pfam	PF00320	1.2E-15	232	266	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	232	257	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MEAPEFFHGG YCRAGNPQFT PEKRLADSKS GDHFIIDDLL DFSNEDAVIT EGTFDTITGN 60 STDSSTVTVL DSCNSSFSGS DTQISGDLGC RNFPDAQFSG DLCVPYDDLA ELEWLSNFVE 120 ESFSSEDLQK LQLISGMKAR TDDVSDTREF QPENNKNNSI FRPEMSVPAK ARSKRSRAAP 180 GNWSSRLLVL SPTTSSSESD VATSSGKKST KGTPKKRESS DGASGNGEGR KCLHCATDKT 240 PQWRTGPMGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL TKHSNSHRKV LELRRQKELQ 300 RAQQQQFLHA NPIFDVSSGE DYLIHHHAGP DFRQLI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250\|UniProtKB:Q8LAU9, ECO:0000269\|PubMed:25265867}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267189.1	0.0	PREDICTED: GATA transcription factor 12-like
Swissprot	P69781	1e-96	GAT12_ARATH; GATA transcription factor 12
TrEMBL	A0A1U8AW42	0.0	A0A1U8AW42_NELNU; GATA transcription factor
STRING	XP_010267189.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	4e-76	GATA transcription factor 12

Publications ? help Back to Top
Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589]