PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

TALE

Protein Properties

Length: 601aa MW: 66530.6 Da PI: 6.5072

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_013870-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25	3.2e-08	531	569	18	54
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA + gLt +qV++WF N R + NNU_013870-RA 531 MFQNflHPYPKDTEKHLLAIRSGLTRSQVSNWFINARVR 569 5887779******************************88 PP
2	BELL	72.5	7.2e-24	404	474	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqe++++k++Ll ll+ Vd rY+q+ ++++tv+s+F+a++++++ ++++ + l++iS+ + +L+++ia+qi NNU_013870-RA 404 QRQEVEARKTQLLALLQVVDSRYSQCLDEIHTVVSAFHAATEMDP-RIHACFVLQTISFLYSNLRERIANQI 474 699****************************************.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.9E-25	320	472	IPR006563	POX domain
Pfam	PF07526	5.0E-29	326	471	IPR006563	POX domain
PROSITE profile	PS50071	11.256	510	573	IPR001356	Homeobox domain
CDD	cd00086	6.46E-11	513	574	No hit	No description
SMART	SM00389	7.8E-5	513	577	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.35E-15	513	582	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-25	516	579	IPR009057	Homeodomain-like
Pfam	PF05920	2.1E-14	530	569	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
MENSIVNNSV DVNYQNPMAI DGMPSSMFPG MVIHQDSLLV NSRNQIMAGY PLLSALQGEP 60 INVRNDLHVA NHDEVNSNAS VSRNLPLDEH GIGDSSPIIS QSIDNNEFQG QFMGGASLTA 120 TSLFNFLAAN GSLQEDLNRI SISSNSSFPL KDLRSTVSNG CCDTSNSSLT ASVNCGYTGE 180 NDYVQCIVSK KDTGVTDQLD GKWTVHKFPG PEDIAGKALP HGFVGSLDPH VWMSSNKSSI 240 SADDTYGYCL PSNELSLSLA TCQPSIISVP TITDQCSEIS SSVVTQHSLH EVGMGVGFGS 300 EQASRKSNEL SLGFGSYAPV QFSQILSESK YLNVAQQILS EFASYSLKNL GCLSYSAGEI 360 GTGQKIPLSS NFSAEREIQK MRSDEFPLHS GETGSNSQKK LPLQRQEVEA RKTQLLALLQ 420 VVDSRYSQCL DEIHTVVSAF HAATEMDPRI HACFVLQTIS FLYSNLRERI ANQILASGEH 480 LSIKCMVGEK FKSSFIQKQW ALQQLRRRDH QSWRPQRGLP ERSVSVLRAW MFQNFLHPYP 540 KDTEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYS EMNNRRGRRT DDATENGHRT 600 P

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

MENSIVNNSV DVNYQNPMAI DGMPSSMFPG MVIHQDSLLV NSRNQIMAGY PLLSALQGEP  60
INVRNDLHVA NHDEVNSNAS VSRNLPLDEH GIGDSSPIIS QSIDNNEFQG QFMGGASLTA  120
TSLFNFLAAN GSLQEDLNRI SISSNSSFPL KDLRSTVSNG CCDTSNSSLT ASVNCGYTGE  180
NDYVQCIVSK KDTGVTDQLD GKWTVHKFPG PEDIAGKALP HGFVGSLDPH VWMSSNKSSI  240
SADDTYGYCL PSNELSLSLA TCQPSIISVP TITDQCSEIS SSVVTQHSLH EVGMGVGFGS  300
EQASRKSNEL SLGFGSYAPV QFSQILSESK YLNVAQQILS EFASYSLKNL GCLSYSAGEI  360
GTGQKIPLSS NFSAEREIQK MRSDEFPLHS GETGSNSQKK LPLQRQEVEA RKTQLLALLQ  420
VVDSRYSQCL DEIHTVVSAF HAATEMDPRI HACFVLQTIS FLYSNLRERI ANQILASGEH  480
LSIKCMVGEK FKSSFIQKQW ALQQLRRRDH QSWRPQRGLP ERSVSVLRAW MFQNFLHPYP  540
KDTEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYS EMNNRRGRRT DDATENGHRT  600
P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	1e-14	519	576	1	58	Homeobox protein Meis1
4xrs_B	1e-14	519	576	1	58	Homeobox protein Meis1
5bng_A	1e-14	519	577	1	59	Homeobox protein Meis2
5bng_B	1e-14	519	577	1	59	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:17908157}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267005.1	0.0	PREDICTED: uncharacterized protein LOC104604402
Refseq	XP_010267006.1	0.0	PREDICTED: uncharacterized protein LOC104604402
Refseq	XP_010267007.1	0.0	PREDICTED: uncharacterized protein LOC104604402
Refseq	XP_010267008.1	0.0	PREDICTED: uncharacterized protein LOC104604402
Swissprot	P48731	3e-98	ATH1_ARATH; Homeobox protein ATH1
TrEMBL	A0A1U8AUX7	0.0	A0A1U8AUX7_NELNU; uncharacterized protein LOC104604402
STRING	XP_010267005.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32980.1	1e-100	homeobox gene 1

Publications ? help Back to Top
Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006]