PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

NNU_012640-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 303aa MW: 33377.5 Da PI: 6.6596

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_012640-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.3	9.1e-32	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q++ NNU_012640-RA 4 SCNGCRVLRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQLCQSA 99 6*********************************************************************************************** PP DUF260 92 aelallke 99 +e++l ++ NNU_012640-RA 100 VEAVLKGA 107 *9998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	8.2E-93	1	302	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.983	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-25	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQSAV EAVLKGAPIV QISSEAAASP 120 SPPMKAYDIR HVSKDENWAA SQDLHKVKTR SRFKRSATKP NKPNLVSAAE LVAETPIADA 180 APICNLRWRR CYPDGYEMAT SHDSSTSHHS EHNGEGDSRE TDSMFSVETV EHSLVGRPEH 240 KEPDPKTSDS QTDESEVELE LTLGFEPVSR HRSVSPAAKD RSEICGSGDD DTCKMELSLD 300 CKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010265141.1	0.0	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	3e-97	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1U8ADX0	0.0	A0A1U8ADX0_NELNU; LOB domain-containing protein 41-like
STRING	XP_010265141.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	9e-88	LOB domain-containing protein 41