PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Publication

Basic Information? help Back to Top

TF ID

NNU_012211-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 259aa MW: 28585.9 Da PI: 9.2091

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_012211-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.6	3.8e-42	74	173	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l++el++ NNU_012211-RA 74 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRVDAVNSLVYEANVRLRDPVYGCMGAISALQQQVQSLQTELNA 169 7*********************************************************************************************** PP DUF260 97 lkee 100 +++e NNU_012211-RA 170 VRAE 173 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.69	73	174	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.2E-42	74	171	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MFTATHKFIF FLLFLILRFF PLILCHFPPS ILLSRERFDE IGTKIKKREA DAADRIGKRH 60 MLGPPPGTLN TITPCAACKL LRRRCAQECP FSPYFSPHEP QKFASVHKVF GASNVSKMLM 120 EVPESQRVDA VNSLVYEANV RLRDPVYGCM GAISALQQQV QSLQTELNAV RAEILKYKYR 180 ETSASIIPSS HAAFFSSGAV SLTAPPPVHS SSPPPFPPPP PPSPLHPLPV SSSSSSVYTT 240 QSSNTDYSSI TNENVSYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	66	190	3	125	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	66	190	3	125	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010264464.1	1e-164	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	4e-80	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A1U8AFM9	1e-162	A0A1U8AFM9_NELNU; LOB domain-containing protein 15-like
STRING	XP_010264464.1	1e-163	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-82	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]