PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

NNU_011682-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 430aa MW: 46634.6 Da PI: 8.1609

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_011682-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	8e-05	320	358	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq NNU_011682-RA 320 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 358 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.725	308	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.40E-5	318	362	No hit	No description
SuperFamily	SSF47459	5.89E-11	318	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.8E-9	322	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MESANLHHQH HQLQEQLVAG SPSLATPSFY GVGSNSHAWN SNLLNDGSFN QNIGGVLANS 60 RDLRQNSDTL ISSSVNNSMF QDLGFHWDSN ASGSFTNHSS HQPHLAKIKE LSDSFPKLSQ 120 TVSNVEEFHL PSTSYVKNEQ QSCHNPTDKM LLKTLASGCQ NNTLQHSAGE SYADAQSCAS 180 TSSFGGLPPP SSGGRNFSQI FPSINISNMY SSSLPFSSSL GVNLQALDFL SSTKFGGSLT 240 QQPSPSHLGM LRDSLSFGVD QLQQSSLIRS FNSPNKVSSF TNRVTETKKP SNSSEPKVSQ 300 AATKKPRFES RSSFPPFKVR KEKLGDRIAA LQQLVSPFGK TDTASVLMEA IGYIKFLQDQ 360 VETLSVPYMK SSRNKICRTM EGGSGDGDRN DEQKQDLRSR GLCLVPLSCT SYFTNDAGGV 420 WPPPNFGGGT

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MESANLHHQH HQLQEQLVAG SPSLATPSFY GVGSNSHAWN SNLLNDGSFN QNIGGVLANS  60
RDLRQNSDTL ISSSVNNSMF QDLGFHWDSN ASGSFTNHSS HQPHLAKIKE LSDSFPKLSQ  120
TVSNVEEFHL PSTSYVKNEQ QSCHNPTDKM LLKTLASGCQ NNTLQHSAGE SYADAQSCAS  180
TSSFGGLPPP SSGGRNFSQI FPSINISNMY SSSLPFSSSL GVNLQALDFL SSTKFGGSLT  240
QQPSPSHLGM LRDSLSFGVD QLQQSSLIRS FNSPNKVSSF TNRVTETKKP SNSSEPKVSQ  300
AATKKPRFES RSSFPPFKVR KEKLGDRIAA LQQLVSPFGK TDTASVLMEA IGYIKFLQDQ  360
VETLSVPYMK SSRNKICRTM EGGSGDGDRN DEQKQDLRSR GLCLVPLSCT SYFTNDAGGV  420
WPPPNFGGGT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263576.1	0.0	PREDICTED: transcription factor bHLH110-like isoform X1
TrEMBL	A0A1U8A8B0	0.0	A0A1U8A8B0_NELNU; transcription factor bHLH110-like isoform X1
STRING	XP_010263576.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	5e-66	bHLH family protein