PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

NNU_011591-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 412aa MW: 47302.7 Da PI: 9.018

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_011591-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	180	203	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H NNU_011591-RA 180 YVCGVCGRKCRTNLDLKKHFKQlH 203 9******************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	4.2E-7	100	153	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.741	180	208	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	182	203	IPR007087	Zinc finger, C2H2
CDD	cd06167	4.26E-14	194	334	No hit	No description
Gene3D	G3DSA:3.40.50.1010	4.2E-7	255	331	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MTMRVSPLRN PTDILPLKAY PPILLKIELT NTSTATFPLI TPKFKLNITS GPLVFRNAAA 60 PSKSKRCQWR FEASTADQAA WVLTTEVDMV RDRQGVWTAK QKKVVVLWDL DNKPPRGPPY 120 QAAIALREIA QRFGEVVDIS AYANRHAFIH LPQWVIEERR EHRRTDTLER KGLSTPAEPY 180 VCGVCGRKCR TNLDLKKHFK QLHERERQKK LNRMRSLKGK KRQRYKERFI SGNHKYEDAA 240 RSLLTPKVGY GLASELRRAG VFVKTVEDKP QAADWALKRQ MQHSMTRGID WLFLVSDDSD 300 FSEMLRRAKD SNLRTVVIGD WDRALGRHAD LWVPWIEVEN GEVSEEDLLP RSVRKREEYS 360 EGGEGLFSLT NSDEDSDYDS DLDPVLEELV ITDSQFSGLG ISAFSEGEEN YD

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MTMRVSPLRN PTDILPLKAY PPILLKIELT NTSTATFPLI TPKFKLNITS GPLVFRNAAA  60
PSKSKRCQWR FEASTADQAA WVLTTEVDMV RDRQGVWTAK QKKVVVLWDL DNKPPRGPPY  120
QAAIALREIA QRFGEVVDIS AYANRHAFIH LPQWVIEERR EHRRTDTLER KGLSTPAEPY  180
VCGVCGRKCR TNLDLKKHFK QLHERERQKK LNRMRSLKGK KRQRYKERFI SGNHKYEDAA  240
RSLLTPKVGY GLASELRRAG VFVKTVEDKP QAADWALKRQ MQHSMTRGID WLFLVSDDSD  300
FSEMLRRAKD SNLRTVVIGD WDRALGRHAD LWVPWIEVEN GEVSEEDLLP RSVRKREEYS  360
EGGEGLFSLT NSDEDSDYDS DLDPVLEELV ITDSQFSGLG ISAFSEGEEN YD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263460.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_010263462.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_010263465.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_010263466.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_019054064.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_019054065.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_019054066.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_019054067.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_019054068.1	0.0	PREDICTED: uncharacterized protein LOC104601724
TrEMBL	A0A1U8AM36	0.0	A0A1U8AM36_NELNU; uncharacterized protein LOC104601724
STRING	XP_010263460.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-163	C2H2-like zinc finger protein