PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011480-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 739aa    MW: 79491.2 Da    PI: 8.0647
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011480-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61e-084314681954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LAk++gL+  qV++WF N R +
  NNU_011480-RA 431 FEHflHPYPKDSDKHMLAKQTGLSRGQVSNWFINARVR 468
                    554459******************************88 PP
2BELL122.32.1e-39295366172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    erqelq++kakL+s+l+eV++rY+qy++q+q+v+s+Fe++ag gsak Yt+lAl++iS++FrcLkdai++qi
  NNU_011480-RA 295 ERQELQMRKAKLVSMLDEVEQRYRQYHHQMQIVVSAFEQAAGFGSAKTYTALALQTISKQFRCLKDAISGQI 366
                    79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-64223364IPR006563POX domain
PfamPF075262.2E-49228363IPR006563POX domain
PROSITE profilePS5007111.904409472IPR001356Homeobox domain
SMARTSM003893.9E-8412476IPR001356Homeobox domain
CDDcd000862.04E-11412473No hitNo description
SuperFamilySSF466892.99E-16413478IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27415478IPR009057Homeodomain-like
PfamPF059209.3E-18429468IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MATYFHGTSE IQADGLQTLY LMNPGYVGYS DTQPPSNMVF LNSAGNTLNP ASLSHAAQTS  60
QHLVGIPLQA TAVAAGAAAA SQDPNRPSVH SQQDMSTIHG FVPRVHYNLW TPMDPTAGAG  120
SPQAHHQHQI STTAAAAAAV SNSVGVTDVS SQLGLRRSVV SPTQQGLSLS LSSHQQTAYG  180
SYRQESDIPA PAPAPAISPT SGNEMRISGG SSSSASAVSN GISGMQSVLL GSKYLKAAQQ  240
LLDEVVNVGK GIKTESAKGS KGLSKLSRDS NAGSGEVSNA GETSTKPAVE FTTAERQELQ  300
MRKAKLVSML DEVEQRYRQY HHQMQIVVSA FEQAAGFGSA KTYTALALQT ISKQFRCLKD  360
AISGQIRATS KSLGEEDCFG GKSEGSRLRF VDQQLRQQRA LQQIGMIQHN AWRPQRGLPE  420
RSVSVLRAWL FEHFLHPYPK DSDKHMLAKQ TGLSRGQVSN WFINARVRLW KPMVEEMYLE  480
ETKDQEQNGS EDKTSRSEVN EDSGSKSNAA QENSPARTDQ IKNFSSKQDN TTNLNAISTA  540
ISNSSTSAIM GGNIRTQAGF SLIGSSDVEG FMQGTSPKKL RSTELQQNSP SSIPSMDTDV  600
KPADTNRDLF TKFDTGRQSR GGYPLITNTT NHGGAFSAYS LGELGRFDPE QFAPRFSGNG  660
VSLTLGLPHC ENLSLSGTQQ TYLSNQNIQL GRRLEIGGGE PNDFCGMSSP PPHSSAAYEN  720
MNIQNGKRFA AQLLPDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15418476563Homeobox protein Meis2
3k2a_B1e-15418476563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263012.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_010263013.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLA0A1U8A6X30.0A0A1U8A6X3_NELNU; BEL1-like homeodomain protein 1
STRINGXP_010263012.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-134BEL1-like homeodomain 1