PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

NNU_011128-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

TALE

Protein Properties

Length: 642aa MW: 70242.7 Da PI: 7.2905

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_011128-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.9	2.3e-10	440	477	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++++ LA+++gLt +qV++WF N R + NNU_011128-RA 440 FEHflHPYPTDTDKQMLARQTGLTRSQVSNWFINARVR 477 554459******************************88 PP
2	BELL	109	2.9e-35	305	376	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+++kk++L+s+l+eV +rYkqy++q+q++++sFe v glg+a+pYts+Alk++S+hF+cLk ai++qi NNU_011128-RA 305 DRGEHRRKKTRLISMLDEVFRRYKQYYQQMQAIVASFESVPGLGNAAPYTSFALKTMSKHFKCLKIAITDQI 376 5789******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.5E-56	243	374	IPR006563	POX domain
Pfam	PF07526	4.2E-41	248	373	IPR006563	POX domain
PROSITE profile	PS50071	12.357	418	481	IPR001356	Homeobox domain
CDD	cd00086	3.75E-14	421	482	No hit	No description
SMART	SM00389	2.5E-11	421	485	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.78E-17	423	488	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.8E-29	424	485	IPR009057	Homeodomain-like
Pfam	PF05920	7.4E-19	438	477	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence Send to blast
MAEGFEPFHV PQQSRRDKLR VVAQNHPTCE EATASATLHG CAGLLPLYDP SLLPSDMLTC 60 ANAGASEFHH HNDNPLGGGA GDGCKQNPAC VVKEEGGNLI GYVGGFINAC SSSSSSHHPY 120 LDPQSSLALN PSSIQDINTN SFLYTSQNLR DFDHSFHGGD VVAFKPETLS MAPDSTTTGQ 180 GLSLSLSSHH TRPQNLPLEL NLPRYEPAML GDKSIGGFIV RGVGGASTSN DVLRSSAPLG 240 PFTGYASILK GSRFLKPAQQ LLEELCGVGR GIYAERSCGD SSLMDPSVEN FSPSEIIDDP 300 LSSGDRGEHR RKKTRLISML DEVFRRYKQY YQQMQAIVAS FESVPGLGNA APYTSFALKT 360 MSKHFKCLKI AITDQIRFMS KALGEQSYEK DGNPAFGAME RGFHCQRPVL NSGVVEHQHI 420 WRPQRGLPER AVAVLRAWLF EHFLHPYPTD TDKQMLARQT GLTRSQVSNW FINARVRLWK 480 PMVEEIHMLE TRQAQKVSEA EGRNVDKPVD HPSGNTISSA KQPQNSSGQK IQDPPSKRTR 540 NDFPPAVNGT DEAVNFSYHN PSNNHHQVGI GVNTMGVNSG VSLTLGLRQN NGIGFSEPFS 600 MNIAHRFGLE TSNQGFVMGG FEAQNRHFGK DIGGQLLRDF VG

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence Send to blast

MAEGFEPFHV PQQSRRDKLR VVAQNHPTCE EATASATLHG CAGLLPLYDP SLLPSDMLTC  60
ANAGASEFHH HNDNPLGGGA GDGCKQNPAC VVKEEGGNLI GYVGGFINAC SSSSSSHHPY  120
LDPQSSLALN PSSIQDINTN SFLYTSQNLR DFDHSFHGGD VVAFKPETLS MAPDSTTTGQ  180
GLSLSLSSHH TRPQNLPLEL NLPRYEPAML GDKSIGGFIV RGVGGASTSN DVLRSSAPLG  240
PFTGYASILK GSRFLKPAQQ LLEELCGVGR GIYAERSCGD SSLMDPSVEN FSPSEIIDDP  300
LSSGDRGEHR RKKTRLISML DEVFRRYKQY YQQMQAIVAS FESVPGLGNA APYTSFALKT  360
MSKHFKCLKI AITDQIRFMS KALGEQSYEK DGNPAFGAME RGFHCQRPVL NSGVVEHQHI  420
WRPQRGLPER AVAVLRAWLF EHFLHPYPTD TDKQMLARQT GLTRSQVSNW FINARVRLWK  480
PMVEEIHMLE TRQAQKVSEA EGRNVDKPVD HPSGNTISSA KQPQNSSGQK IQDPPSKRTR  540
NDFPPAVNGT DEAVNFSYHN PSNNHHQVGI GVNTMGVNSG VSLTLGLRQN NGIGFSEPFS  600
MNIAHRFGLE TSNQGFVMGG FEAQNRHFGK DIGGQLLRDF VG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5bng_A	3e-17	427	485	1	59	Homeobox protein Meis2
5bng_B	3e-17	427	485	1	59	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269\|PubMed:12874117, ECO:0000269\|PubMed:12897247, ECO:0000269\|PubMed:13678595, ECO:0000269\|PubMed:15019989, ECO:0000269\|PubMed:15120075, ECO:0000269\|PubMed:15155890, ECO:0000269\|PubMed:16741748}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010262659.1	0.0	PREDICTED: BEL1-like homeodomain protein 9
Swissprot	Q9LZM8	1e-110	BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBL	A0A1U8AJF8	0.0	A0A1U8AJF8_NELNU; BEL1-like homeodomain protein 9
STRING	XP_010262659.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	1e-109	TALE family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Pabón-Mora N,Wong GK,Ambrose BA Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006] Andrés F, et al. Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant Physiol., 2015. 169(3): p. 2187-99 [PMID:26417007] Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis. Dev. Cell, 2016. 39(2): p. 198-208 [PMID:27666746] Sehra B,Franks RG Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development. Front Plant Sci, 2017. 8: p. 1712 [PMID:29085379] Simonini S,Stephenson P,Østergaard L A molecular framework controlling style morphology in Brassicaceae. Development, 2018. [PMID:29440299]