PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

NNU_011086-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 223aa MW: 24692.7 Da PI: 5.168

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_011086-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.5	1.2e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkC+++Cv+apyf+ eq +++fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA ar+rdP+yG+v++il+lqqq+ +l++e++ NNU_011086-RA 7 SCGACKFLRRKCSNGCVFAPYFCYEQgANHFAAIHKVFGASNVSKLLSHLPVHNRSEAAITISYEALARMRDPIYGCVAHILALQQQVVNLQEEIE 102 6***********************89*****************************************************************9 PP DUF260 96 llkee 100 l+++ NNU_011086-RA 103 FLENQ 107 99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.791	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-37	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MTGVGSSCGA CKFLRRKCSN GCVFAPYFCY EQGANHFAAI HKVFGASNVS KLLSHLPVHN 60 RSEAAITISY EALARMRDPI YGCVAHILAL QQQVVNLQEE IEFLENQVAN LANDAVSHQS 120 SQQATSEPDY WFQFSSQRDP MDAQYCLNQQ PLHHPSNAAV NATSTLMLDN DEMNAQLPPL 180 YMLDNQSSSY CHSATSPDAL ERILSMGMQQ EILPTDPWFG NAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-36	3	102	7	105	LOB family transfactor Ramosa2.1
5ly0_B	3e-36	3	102	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010262592.1	1e-168	PREDICTED: LOB domain-containing protein 33-like
Swissprot	Q9LHS8	6e-57	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A1U8A7P0	1e-167	A0A1U8A7P0_NELNU; LOB domain-containing protein 33-like
STRING	XP_010262592.1	1e-168	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	2e-59	LOB domain-containing protein 33

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]