PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Basic Information? help Back to Top

TF ID

NNU_010759-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NF-YC

Protein Properties

Length: 220aa MW: 24982.2 Da PI: 6.5085

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_010759-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	54.7	2.2e-17	1	49	53	101
NF-YC 53 lfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 +fil+ltl sw+++eenk r+++k+d aa++tr difdflvdivp+++l NNU_010759-RA 1 MFILDLTLHSWNRTEENKHRAFQKNDFAATITRIDIFDFLVDIVPNEDL 49 8*********************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.1E-10	1	45	IPR009072	Histone-fold
SuperFamily	SSF47113	4.09E-8	1	46	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MFILDLTLHS WNRTEENKHR AFQKNDFAAT ITRIDIFDFL VDIVPNEDLK DEVLASMPKE 60 ECCLLEVSCW PSSYLLHAST FTAGAMGQAS YSSLEFSSLK VQHQIPSVKK AQTWFQLPPV 120 VIESISIMLK TDLCTDNLEA NYIFLGLVKL CQPEIVNLRV KNGTSYEIGR LFPVVFPFVV 180 NRSALLRTKL AVLYASLLFE GKRLEMRVLL YASALDRILA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-17	1	45	50	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.4	2e-28	nuclear factor Y, subunit C9