PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009815-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NF-YC
Protein Properties Length: 304aa    MW: 33355.4 Da    PI: 6.0787
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009815-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.72.6e-561152191102
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflv
  NNU_009815-RA 115 QLQVFWANQiqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIFDFLV 210
                    89******98889*********************************************************************************** PP

          NF-YC  94 divprdelk 102
                    divprdelk
  NNU_009815-RA 211 DIVPRDELK 219
                    ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.19E-34101209IPR009072Histone-fold
PfamPF008082.2E-21137200IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-37138215IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
PSTPLPLFLS LSLSLSSFSL GFSPLESSGQ ASMDQSGQQQ QSQQQPSAGA VTSAAQITYT  60
SPTYQSSAMV ASGTPAVAVP SATQPATTFS ASQHQLAYQQ AQHFHHQQQQ QQQQQLQVFW  120
ANQIQEIEQT TDFKNHSLPL ARIKKIMKAD EDVRMISAEA PVVFAKACEM FILELTLRSW  180
IHTEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPRDELKE EGLGIPRAAV PAVGAPADSI  240
PYYYVPPPHQ VGAPGMIMGK PVDQAAAALY AAQQPRPPVA YMPWPQPQPQ HQQSQQSQQQ  300
QNDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-58123215395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187193RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260573.10.0PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ655V53e-88NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A1U8AE940.0A0A1U8AE94_NELNU; nuclear transcription factor Y subunit C-2-like
STRINGXP_010260573.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-72nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]