PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009776-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 548aa    MW: 61113.6 Da    PI: 4.7052
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009776-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.72.2e-1341795482374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++lL++cA a+s+g++e+a+a++++l+  +s +gdp qR+aay++e+Laar+a s+++lykal+++e +   ss++l+a+++++ev+P++kf+ ++
  NNU_009776-RA 179 KQLLFDCAVAISEGNMEEASAMITELRRVVSIQGDPSQRIAAYMVEGLAARMAASGKGLYKALKCKEPP---SSDRLSAMQVLFEVCPYFKFGVMA 271
                    589*****************************************************************9...9*********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN aI ea++ e+rvHiiDfdi+qG+Q++ LlqaLa +p++p +++iT+v++pes+      l+ +g+rL+++Ae++++pfef++l a +++d+++
  NNU_009776-RA 272 ANTAIAEAIKDERRVHIIDFDINQGTQYIQLLQALAIQPSKPQNIKITVVDDPESVqrAVGGLKVIGQRLENLAEAVKLPFEFRAL-AAKTADVTP 366
                    ******************************************************99878889***********************5.9999***** PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    ++L+++pgEa++Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+v+eq+++ n+++F+ rf+ea +yy+a+f+sl+a+lpres +r++vEr
  NNU_009776-RA 367 SKLDCQPGEAVIVNFSFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVIEQDMNANTAPFFPRFIEAYNYYTAVFNSLDATLPRESPDRMNVER 462
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++l+r+ivn+vaceg++r+er e ++kWr+r+++aGF++ pls +++++++ ll+++ ++ y+v++e+g+l +gW+d+ L++ SaWr
  NNU_009776-RA 463 QCLARDIVNIVACEGEDRIERYEVAGKWRARMMMAGFTSCPLSAYVNETVQKLLKQYCDR-YTVKKEEGALHFGWEDKMLIVSSAWR 548
                    **********************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.1152529IPR005202Transcription factor GRAS
PfamPF035147.5E-132179548IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MCSLLPLDAR LLHQMEFLCP AKSAIPGTIF YTQGGSSYQI VTTSSALVST QNSVNSFTAM  60
RHPVAYQSYC LSGYLDDQNP DNGTLDYDDD EVRLKLQELE NALLNDNDDD DDVFGMDQNM  120
DIDGEWTDPI KDLLFINSPK ESSSSDSNLS GTSSNKKVPE MPMIPPICPP HSSRTPTPKQ  180
LLFDCAVAIS EGNMEEASAM ITELRRVVSI QGDPSQRIAA YMVEGLAARM AASGKGLYKA  240
LKCKEPPSSD RLSAMQVLFE VCPYFKFGVM AANTAIAEAI KDERRVHIID FDINQGTQYI  300
QLLQALAIQP SKPQNIKITV VDDPESVQRA VGGLKVIGQR LENLAEAVKL PFEFRALAAK  360
TADVTPSKLD CQPGEAVIVN FSFQLHHMPD ESVSTVNQRD QLLRMVKSLN PKLVTVIEQD  420
MNANTAPFFP RFIEAYNYYT AVFNSLDATL PRESPDRMNV ERQCLARDIV NIVACEGEDR  480
IERYEVAGKW RARMMMAGFT SCPLSAYVNE TVQKLLKQYC DRYTVKKEEG ALHFGWEDKM  540
LIVSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6618554726378Protein SCARECROW
5b3h_A1e-6518554725377Protein SCARECROW
5b3h_D1e-6518554725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260476.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A1U8A0Q60.0A0A1U8A0Q6_NELNU; scarecrow-like protein 1
STRINGXP_010260476.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]