PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009693-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARF
Protein Properties Length: 763aa    MW: 82339.4 Da    PI: 6.9678
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009693-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.6e-24170271199
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +++
  NNU_009693-RA 170 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVNRKKLVSGDAVLFL--RGDNG 262
                    99****************************963.3445679************************************************..34899 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    el+++++r+
  NNU_009693-RA 263 ELRLGIRRA 271
                    99****996 PP
2Auxin_resp120.61.2e-39296377182
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                    +a+a+s+ksvF+v+YnPra++seF++++ k++k++++++svGm+fkm+feted++err++G+++g+sd+dpvrWp+SkWrsL
  NNU_009693-RA 296 VANAVSSKSVFHVYYNPRATQSEFIIPLCKFLKSFDQPFSVGMKFKMRFETEDAAERRYTGLIAGISDIDPVRWPGSKWRSL 377
                    689*****************************************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-40163276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-43165284IPR015300DNA-binding pseudobarrel domain
CDDcd100178.28E-23168270No hitNo description
SMARTSM010194.1E-24170272IPR003340B3 DNA binding domain
PfamPF023623.6E-22170271IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281170272IPR003340B3 DNA binding domain
PfamPF065071.0E-34296377IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MGGVIDLNTV TDDDDDASAV VECGPASLSS PSSSSASVSA SASPASASLC SSSSLPSAAG  60
GAVCLELWHA CAGPLISLPK KGSVVVYLPQ GHLEHISEFP TTVFDLPPHV FCRVVDVKLH  120
AEMATDEVYA QVSLVPEIEI EQKLRRGGME ADDEEEEIEV AAKPTTPHMF CKTLTASDTS  180
THGGFSVPRR AAEDCFPPLD YKQQRPSQEL IAKDLHGVEW KFRHIYRGQP RRHLLTTGWS  240
AFVNRKKLVS GDAVLFLRGD NGELRLGIRR AAQVKGSIPF PVLCSQNMNG GTLVAVANAV  300
SSKSVFHVYY NPRATQSEFI IPLCKFLKSF DQPFSVGMKF KMRFETEDAA ERRYTGLIAG  360
ISDIDPVRWP GSKWRSLLVR WDNVVETNRH NRVSPWEIEP SGSVSASSSL SAPGSKRTRM  420
TLPSAMPDFP VPNGTGFSDF GESLRFQKVL QGQEIFGFTT PSDGLDVQNH HPSESRRCFP  480
GSNSSGMAAI GSGIRVPHGN SDIPFIGIGF GESIGFHKVL QGQEIFPKPP YGRASLGHGS  540
GGFGSDGVHI SSSGSGWTSL IQGFSNHVQP STSSVQVSSP SSVLMFQQAS IQNSHTAYGF  600
NNQKGEEGNY CRLFDGSQTS GWKVTSPSCH HTMEGLGGKS SIDKFQENNQ LNTTKYVSAA  660
TSQTALKGNQ ELLPASRSGC RLFGFLLNEE SQAANEEDVD TLITSHSTKN LNLEPTFVHS  720
AEKQSHLKSP TLSKSVGKGC TKVNLLSAIR AMPFDVAMNY TSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1226240718361Auxin response factor 1
4ldw_A1e-1226240718361Auxin response factor 1
4ldw_B1e-1226240718361Auxin response factor 1
4ldx_A1e-1226240718361Auxin response factor 1
4ldx_B1e-1226240718361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260358.10.0PREDICTED: auxin response factor 3-like
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLA0A1U8A0F40.0A0A1U8A0F4_NELNU; Auxin response factor
STRINGXP_010260358.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]