PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

SBP

Protein Properties

Length: 189aa MW: 21404 Da PI: 9.4102

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_009623-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.5	6.9e-42	66	143	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+adl+eak+yhrrhkvCe+h+kapvvlv+ l+qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk+++ NNU_009623-RA 66 CCQAEKCTADLTEAKRYHRRHKVCEQHAKAPVVLVASLRQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSST 143 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.9E-34	59	128	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.77E-38	64	145	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.325	64	141	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.3E-31	67	140	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MEKIMPDGRQ SLIKDKAKKE VVAEEEGDEE EEEVGGFEDD KRKRTTVVSP PRRKGSAGGG 60 GVAPPCCQAE KCTADLTEAK RYHRRHKVCE QHAKAPVVLV ASLRQRFCQQ CSRFHELSEF 120 DEAKRSCRRR LAGHNERRRK SSTESHGEGS SHKGVVPQLK ENHCRQADQS GRMQVPHTGS 180 TTYKHFQIR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-38	55	140	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00634	PBM	Transfer from PK22320.1	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260271.1	1e-137	PREDICTED: squamosa promoter-binding protein 1
Swissprot	Q38740	2e-44	SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBL	A0A1U8A075	1e-135	A0A1U8A075_NELNU; squamosa promoter-binding protein 1
STRING	XP_010260271.1	1e-136	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	2e-38	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]