PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009391-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bZIP
Protein Properties Length: 402aa    MW: 43527 Da    PI: 5.6924
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009391-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.87.3e-16214267356
                    XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                    +lkr rr+ +NRe+ArrsR+RK+a ++ Le  v++L +eN +L k+l   +++ 
  NNU_009391-RA 214 DLKRIRRMVSNRESARRSRRRKQAHLADLELQVDQLRGENASLYKQLTAASQQF 267
                    69******************************************9888776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-12209268No hitNo description
SMARTSM003381.6E-15212276IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.024214266IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.19E-12215267No hitNo description
PfamPF001701.4E-13215263IPR004827Basic-leucine zipper domain
CDDcd147024.17E-6217268No hitNo description
PROSITE patternPS000360219234IPR004827Basic-leucine zipper domain
PfamPF124986.4E-10283393IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MNQKPVDELI GCDATRPRNL NSSIFGGNMK RSASELNLEE FLRPTVASPI GDNENRSSKE  60
ERIGEVRVQR ARISGEPDGF FSVQVQDKTF EDVCAAADDL GFGGLRDRPD TLNGFTNYGG  120
LTENRVWSQN VTPKHSNISA TMDSQSSICG PASSCLTFAC TGTGSAGSPT SAHKPKSGDT  180
QAQGANSGSS REQSDEDDLE IEAGSCEQST DPIDLKRIRR MVSNRESARR SRRRKQAHLA  240
DLELQVDQLR GENASLYKQL TAASQQFHEA ATDNRVLKSD VEALRVKVRL AEDMVARGSL  300
TCSLNHLLQN HSSSPQSLNT HNLCRVPEVL PSVGTPGEDA SYAGMSINRQ VASLGLENGD  360
ADNGSAKNRL NGNAAPLQRI ASLEHLQNRM SDAVSCISEI WP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228235RRSRRRKQ
2230235SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259866.10.0PREDICTED: basic leucine zipper 9-like isoform X1
SwissprotQ6H5005e-74RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A1U8A4U70.0A0A1U8A4U7_NELNU; basic leucine zipper 9-like isoform X1
STRINGXP_010259866.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.15e-47basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]