PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009382-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 285aa    MW: 29911.4 Da    PI: 8.8877
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009382-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.6e-06184206123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F+r  nL+ H r H
  NNU_009382-RA 184 FVCEICERGFPREQNLQLHRRGH 206
                    89*******************88 PP
2zf-C2H213.20.00026260282123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC +C+k +  + + k H r +
  NNU_009382-RA 260 YKCDKCSKKYAVRTDWKAHRRIC 282
                    9*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-8183206No hitNo description
Gene3DG3DSA:3.30.160.603.7E-4183206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.492184206IPR007087Zinc finger, C2H2
SMARTSM003550.0062184206IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
SMARTSM0035590225255IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-5248281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.76E-8255281No hitNo description
SMARTSM0035553260280IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MPVDLEDSST INASQASGEA EIATVSSSGN EKAPPSSASG KEEAHLSSSG NQVTPASPNR  60
GEGEADQAAS SAPTSGEEAI VSSSVNQTEA APPLAISGKV TASSATDQTV PLLASGGATA  120
SSSASQPIPL SSLPRGALVF SAIPTPPQSS ATPTKRKRSL PGTPDPDAEV IALSPESLTA  180
TDRFVCEICE RGFPREQNLQ LHRRGHNLPW KLGGGPAKEV RKRVYVCPVP TCVHHDPSRA  240
LGDLTGIKKH FFRKHGEKKY KCDKCSKKYA VRTDWKAHRR ICGTK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259853.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_010259854.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_010259855.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_010259856.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_010259858.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
TrEMBLA0A1U7ZZ630.0A0A1U7ZZ63_NELNU; protein indeterminate-domain 4, chloroplastic-like
STRINGXP_010259853.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.15e-68indeterminate(ID)-domain 4