PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008980-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 490aa    MW: 54737 Da    PI: 9.9186
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008980-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-05126148123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  NNU_008980-RA 126 FVCEICNKGFQRDQNLQLHRRGH 148
                    89*******************88 PP
2zf-C2H213.40.00023202224123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k++  +s+ k H +t+
  NNU_008980-RA 202 WKCEKCSKRYAVQSDWKAHSKTC 224
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.07E-6125148No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5125148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.8E-5126148IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.949126148IPR007087Zinc finger, C2H2
SMARTSM003550.017126148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4190223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.07E-6197222No hitNo description
SMARTSM00355130202222IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAGPPVVHLL GLSFNFRIIE IGTGAHLKDL KLGSCNSVLH KCGFRRAREG MLLATMSNST  60
SLSEDASVSS GTRVQDLSSL INPISSSISP QQQQKIKKKR NLPGNPDPDA EVIVLSPKTL  120
LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EMRKRVYVCP EPSCVHHHPS  180
RALGDLTGIK KHFCRKHGEK KWKCEKCSKR YAVQSDWKAH SKTCGTRQYR CDCGTIFSRK  240
DSFFTHRAFC DALAEESARL SRNLSEHPLH LHPQNPTPLF PFLTQPQNFP NQTSQIDPPH  300
NPNSTQNPVQ IKAEAHHHHH QQQHQIPTIS PPPLFYDQPS HKQLIASPLQ HHLQMATDNP  360
NSKTNTAHMS ATALLQKAAN FGAAALSSAT QTQPVGHHIT SSIKRLDEYG KRNHVGFPLE  420
NLATWQKNSR LTRDFLGLTG DCEGGINVKD LLSFAGGVEF TPYDRDVSLL IAEHATSGKW  480
GGDYGSRIEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35198261366Zinc finger protein JACKDAW
5b3h_F2e-35198261366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259147.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotO227591e-127IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A1U8AAQ80.0A0A1U8AAQ8_NELNU; protein indeterminate-domain 12-like
STRINGXP_010259147.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-119indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]