PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008965-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 604aa    MW: 68595.2 Da    PI: 6.4237
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008965-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.44.3e-1497171286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    W ++e+laL++ar+ +e+ +++       We+vs+k++e gf+rsp +Ckek+e+++ r+    +++++     +++++ f++le
  NNU_008965-RA  97 WREEEILALLRARSTIETGFSDF-----IWEHVSRKLAEVGFRRSPDKCKEKFEEMS-RFCGSSNNNNSY----TKNYRSFSELE 171
                    ********************998.....9**************************98.565555555553....45677777776 PP
2trihelix90.42e-28455540186
       trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW+++ev  Li++r ++ ++ ++ +  k p We++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  NNU_008965-RA 455 RWPRDEVNSLINLRCNLYNSTEDkDGNKVPIWERISQGMLELGYRRSAKKCKEKWENINKYFRKTKDANKKR-SLDSKTCPYFHQLS 540
                    8*******************99736799*******************************************8.999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.4293150IPR001005SANT/Myb domain
PfamPF138373.8E-1095172No hitNo description
PROSITE profilePS500906.19196148IPR017877Myb-like domain
SMARTSM007171.4452515IPR001005SANT/Myb domain
CDDcd122034.81E-23454520No hitNo description
PfamPF138373.1E-18454541No hitNo description
PROSITE profilePS500906.62455513IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MFNGVPDQFH ELISSRAALT LPLPLTLPLH VSPPPYFSGL DPSPPNHQLF QSHSLLLHQL  60
HRHSSSVQNE EQEEEREMTS SMELPGLKST SELVDPWREE EILALLRARS TIETGFSDFI  120
WEHVSRKLAE VGFRRSPDKC KEKFEEMSRF CGSSNNNNSY TKNYRSFSEL EAVYEGENPK  180
TSAEKQVEIT NEGGGKVTLN LEDNSGNESL VNPPVENKYV VKKSKVKKRK RHHKLELMKN  240
FCEEIVNKIM AQQEELQNKL LQDMERREEE RFAREEAWRK QEMIRINREI ETRQHEQEVA  300
RDREATIIEL LQNLTSIGPS QNLGFSVQNE DLLQTTNNKQ NRLTSPSSSP AQKPTSLSDT  360
FSQFNLKEPS SSANPNPPTS SSEAPSEPQN SDPTTSHQAN PIVPTSSTPA MAPQNPNSRT  420
AQNNTVLLPT SSSTAVLPPQ NPNSTSSDRE DHGKRWPRDE VNSLINLRCN LYNSTEDKDG  480
NKVPIWERIS QGMLELGYRR SAKKCKEKWE NINKYFRKTK DANKKRSLDS KTCPYFHQLS  540
SLYSQGTLSV PSEAPENHSS SPENRLESPE TRFGSSKCGF SEAIMHVDEG KKNLGQVPAL  600
DFEY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259125.10.0PREDICTED: trihelix transcription factor GTL2-like
TrEMBLA0A1U7ZX900.0A0A1U7ZX90_NELNU; trihelix transcription factor GTL2-like
STRINGXP_010259125.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-56Trihelix family protein