PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Basic Information? help Back to Top

TF ID

NNU_008957-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

CPP

Protein Properties

Length: 716aa MW: 78944.4 Da PI: 6.0544

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008957-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	28	4.3e-09	424	447	17	40
TCR 17 YCeCfaagkkCseeCkCedCkNke 40 YCeCfaag++C e C+C++C+Nk NNU_008957-RA 424 YCECFAAGVYCIEPCSCQECFNKP 447 **********************96 PP
2	TCR	50.6	3.8e-16	494	532	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+C++CkN NNU_008957-RA 494 RHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCDGCKNA 532 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.2E-4	409	449	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	32.363	410	534	IPR005172	CRC domain
Pfam	PF03638	1.0E-5	424	446	IPR005172	CRC domain
SMART	SM01114	1.2E-16	494	535	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.4E-11	496	532	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence Send to blast
MDTPDRNQIS TPISKFEDSP VFNYINSLSP IKPVKSVHIT QAFHSLNFAS IPSIFTSPHV 60 SSNKESRFSR RYHFADPSKS GLSDNKNEGN TSAGVSEVVQ PSECSADQQG CFAPEHSIRE 120 VNVEPPTENL NLAIELPRTL RYDCGSPDGD LMPGNDTKTN PVPEMAVTPV SLVQFVQEVS 180 EERCQSFETE AELQEMHQAE QNKEEGAGCD WENLISDTAD LLIFYSSTDM EVSKGHDQNL 240 VDPETTSFTS LMSKLPQENT NDLHKTQPVG PFGSREQHKM EDPTAQPREL EQKETDQTKN 300 ILSATFLNKQ VVSDPIEKMD DKAGSSISFS CKPHPANQRG MRRRCLVFEI SGAHKKKLAN 360 DSNSSSSVSP QSDGKNASDE KQLVPVKPGS RSSPCILPGI GLHLNALATT SKDCRIVKHE 420 SLPYCECFAA GVYCIEPCSC QECFNKPIHE DTVLATRKQI ESRNPLAFAP KVIRSSESIP 480 ETGEDLNKTP ASARHKRGCN CKKSSCLKKY CECYQGGVGC SINCRCDGCK NAFGRKDGFA 540 SMGMEEAEPE EEEKETCEKN GVDIGVHNNE ILKNEEQYSD SVLPITPSFQ MCRPSEQLPF 600 ASSGKPPRSS VCSIGSSPQL HTSQRLGKPD LLHPQPKFER HFQVIPEDDT PEILKGDCSP 660 ISGVKMSSPN CKRVSPPHLG LSPNRRSGRK LILQSIPSFP SLTPHHESNN FPLKFS

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence Send to blast

MDTPDRNQIS TPISKFEDSP VFNYINSLSP IKPVKSVHIT QAFHSLNFAS IPSIFTSPHV  60
SSNKESRFSR RYHFADPSKS GLSDNKNEGN TSAGVSEVVQ PSECSADQQG CFAPEHSIRE  120
VNVEPPTENL NLAIELPRTL RYDCGSPDGD LMPGNDTKTN PVPEMAVTPV SLVQFVQEVS  180
EERCQSFETE AELQEMHQAE QNKEEGAGCD WENLISDTAD LLIFYSSTDM EVSKGHDQNL  240
VDPETTSFTS LMSKLPQENT NDLHKTQPVG PFGSREQHKM EDPTAQPREL EQKETDQTKN  300
ILSATFLNKQ VVSDPIEKMD DKAGSSISFS CKPHPANQRG MRRRCLVFEI SGAHKKKLAN  360
DSNSSSSVSP QSDGKNASDE KQLVPVKPGS RSSPCILPGI GLHLNALATT SKDCRIVKHE  420
SLPYCECFAA GVYCIEPCSC QECFNKPIHE DTVLATRKQI ESRNPLAFAP KVIRSSESIP  480
ETGEDLNKTP ASARHKRGCN CKKSSCLKKY CECYQGGVGC SINCRCDGCK NAFGRKDGFA  540
SMGMEEAEPE EEEKETCEKN GVDIGVHNNE ILKNEEQYSD SVLPITPSFQ MCRPSEQLPF  600
ASSGKPPRSS VCSIGSSPQL HTSQRLGKPD LLHPQPKFER HFQVIPEDDT PEILKGDCSP  660
ISGVKMSSPN CKRVSPPHLG LSPNRRSGRK LILQSIPSFP SLTPHHESNN FPLKFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	5e-12	449	531	49	120	Protein lin-54 homolog
5fd3_B	5e-12	449	531	49	120	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010259114.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like
Refseq	XP_010259115.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like
TrEMBL	A0A1U7ZX79	0.0	A0A1U7ZX79_NELNU; CRC domain-containing protein TSO1-like
STRING	XP_010259114.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	6e-96	TESMIN/TSO1-like CXC 2