PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

NNU_008083-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB

Protein Properties

Length: 322aa MW: 36189.3 Da PI: 8.3781

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008083-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	8e-16	26	73	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell ++++ G g+W+t +++ g+ R++k+c++rw +yl NNU_008083-RA 26 RGPWTPEEDELLSSYIRREGVGRWRTLPKRAGLLRCGKSCRLRWVNYL 73 89****************************99**********97 PP
2	Myb_DNA-binding	46.7	7.1e-15	84	124	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l NNU_008083-RA 84 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 124 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.837	21	73	IPR017930	Myb domain
SuperFamily	SSF46689	2.92E-28	23	120	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-12	25	75	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-14	26	73	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-20	27	80	IPR009057	Homeodomain-like
CDD	cd00167	5.18E-10	28	73	No hit	No description
PROSITE profile	PS51294	23.034	74	128	IPR017930	Myb domain
SMART	SM00717	1.2E-13	78	126	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-23	81	129	IPR009057	Homeodomain-like
CDD	cd00167	2.22E-11	84	124	No hit	No description
Pfam	PF00249	1.2E-13	84	124	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MRNPSSASAV SSTSKTPCCS KVGLKRGPWT PEEDELLSSY IRREGVGRWR TLPKRAGLLR 60 CGKSCRLRWV NYLRPCVKRG HIAPDEEDLI LRLHRLLGNR WSLIAGRIPG RTDNEIKNYW 120 NTHLSKKLIS QGIDPRTHKP LNPNPNSLED FHTPPPASGL NPIPNLDPNP NSRGLQETGV 180 GDGATTIYKG NKRFREINVN LDQDHSAAFE NSNGNWQKSE GFTISSNLGN NEEGNIDYCT 240 DDAFSSFLNS LINLDVFGNQ EQQQQYQRQQ QPNHLIAPPD PLLNSAQTFG DGALWEAAIT 300 SSTAAFSHDE YKRFIDHVHK HF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-23	24	128	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010257627.1	0.0	PREDICTED: transcription repressor MYB5-like
Swissprot	Q38850	6e-80	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A1U7ZTI1	0.0	A0A1U7ZTI1_NELNU; transcription repressor MYB5-like
STRING	XP_010257627.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-80	myb domain protein 5

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]