PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

NNU_007924-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 467aa MW: 50446.2 Da PI: 8.0779

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_007924-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	9.8e-12	395	440	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L + veYIk+Lq NNU_007924-RA 395 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLSVEYIKDLQ 440 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.729	389	439	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-15	392	450	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.70E-12	393	444	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.9E-15	394	450	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-12	395	445	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.8E-9	395	440	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MMFGGSQALP KDMNLLFPSS FKYPEELQSR SREAMDSDLH LQQQQQQQRQ QLSSGLMRYR 60 SAPSSFFANF IDGSGSGVEE GCEGFLHHRP SSPEAESMFA RFMSSGRGGG GGSGGEPALP 120 DPREIGERPS AVAPSCAAVN QRNSQFMAPM EREGEVVSQQ NGYPSDSQMM YQSQTPPPVP 180 NHSSAPTAPT VDNSYRVVNS MTIDRPPQVK SDGGPSNLIR HSSSPAGLFA NLTVENGFAV 240 MGGMGNFRAG NGCNGETSPA TGRLKGQISF SSGTHSSSGP MPQIAEEGIG GSSSDDGSFG 300 NSNAGNRGYI PGFPIGSWDD SALVSENLTG LKRLRDINGG NQNGEAVHRP PMLAHHFSLP 360 KTSTEMAALE KFLQFQDSVP CKVRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD 420 KQTNTADMLD LSVEYIKDLQ KQVKTLTDKR ANCTCSSKQK PYTNPTV

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MMFGGSQALP KDMNLLFPSS FKYPEELQSR SREAMDSDLH LQQQQQQQRQ QLSSGLMRYR  60
SAPSSFFANF IDGSGSGVEE GCEGFLHHRP SSPEAESMFA RFMSSGRGGG GGSGGEPALP  120
DPREIGERPS AVAPSCAAVN QRNSQFMAPM EREGEVVSQQ NGYPSDSQMM YQSQTPPPVP  180
NHSSAPTAPT VDNSYRVVNS MTIDRPPQVK SDGGPSNLIR HSSSPAGLFA NLTVENGFAV  240
MGGMGNFRAG NGCNGETSPA TGRLKGQISF SSGTHSSSGP MPQIAEEGIG GSSSDDGSFG  300
NSNAGNRGYI PGFPIGSWDD SALVSENLTG LKRLRDINGG NQNGEAVHRP PMLAHHFSLP  360
KTSTEMAALE KFLQFQDSVP CKVRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD  420
KQTNTADMLD LSVEYIKDLQ KQVKTLTDKR ANCTCSSKQK PYTNPTV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010257364.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X1
TrEMBL	A0A1U7ZYF0	0.0	A0A1U7ZYF0_NELNU; transcription factor bHLH130-like isoform X1
STRING	XP_010257364.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-71	bHLH family protein