PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Publication

Basic Information? help Back to Top

TF ID

NNU_007856-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 729aa MW: 78838.4 Da PI: 6.3541

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_007856-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	309	329	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg NNU_007856-RA 309 PCPDFRK-GACRRGDMCEYAHG 329 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00204	1.10E-14	37	163	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.6E-17	37	169	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.04E-16	38	165	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	7.6E-10	81	154	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	18.298	85	193	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0097	85	115	IPR002110	Ankyrin repeat
PRINTS	PR01415	8.7E-5	86	101	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.209	120	155	IPR002110	Ankyrin repeat
SMART	SM00248	2.8E-4	120	152	IPR002110	Ankyrin repeat
PRINTS	PR01415	8.7E-5	139	153	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	304	330	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	309	331	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.9E-5	309	329	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-4	309	331	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	42	339	362	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence Send to blast
MCGGPEQLKS TSSSPPPSSE ESKPTIKSMN HLTVETEDSF SSLLELAANN DLEGFKRSLE 60 RDASAVDEIG LWYGRQKGSK QMVLEHRTPL MVAATYGSID VLKLILTLSE ADVNRSCGPD 120 KSTALHCAAS GGSVNALDVV KLLLMSGADP NSVDANGRRP ADVIVVSPKL PNMKIALEEL 180 LSSNGSSIPM DEESLRVSIN TSNSNSPPLS SSPDNGSPSS PSDSTSSPTT MKLSDLPAST 240 SEKKEYPIDP SLPDIKNSIY ATDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKFHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTN CMRRVCFFAH 360 TAEEMRPLYV STGSAVPSPR STASAATAME MAAAMSLLPG SPSSVSVMSP SPFTPPMSPS 420 GNGINHSSLA WPQPNVPTLL LPGSSLQSSR LRSSLNARDI PAEDLNLLQD FEAQQQQLLN 480 ELSCYSQPRL GTSSVNRSGR SKALTPSNLE ELFTAEISSS PRYSDQASTV FSPSHKSAVL 540 NQFQQQQSML SPINTSMFSP KNVDHPLLQA PFGVPSPGRS PRGVEPLSPM SSRLSAFAQR 600 EKQHQLRSLS SRELGSGVNG VVGSPVNSWT KWGSPNGKLD WAVHGDELGQ FKRSSSFELG 660 TNGEEPDLSW VQSLVKESPP EIKEKLAIPT SATAASSSEA SKSNSQVEAI DHSVLGAWLE 720 QMQLDQLVA

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence Send to blast

MCGGPEQLKS TSSSPPPSSE ESKPTIKSMN HLTVETEDSF SSLLELAANN DLEGFKRSLE  60
RDASAVDEIG LWYGRQKGSK QMVLEHRTPL MVAATYGSID VLKLILTLSE ADVNRSCGPD  120
KSTALHCAAS GGSVNALDVV KLLLMSGADP NSVDANGRRP ADVIVVSPKL PNMKIALEEL  180
LSSNGSSIPM DEESLRVSIN TSNSNSPPLS SSPDNGSPSS PSDSTSSPTT MKLSDLPAST  240
SEKKEYPIDP SLPDIKNSIY ATDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKFHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTN CMRRVCFFAH  360
TAEEMRPLYV STGSAVPSPR STASAATAME MAAAMSLLPG SPSSVSVMSP SPFTPPMSPS  420
GNGINHSSLA WPQPNVPTLL LPGSSLQSSR LRSSLNARDI PAEDLNLLQD FEAQQQQLLN  480
ELSCYSQPRL GTSSVNRSGR SKALTPSNLE ELFTAEISSS PRYSDQASTV FSPSHKSAVL  540
NQFQQQQSML SPINTSMFSP KNVDHPLLQA PFGVPSPGRS PRGVEPLSPM SSRLSAFAQR  600
EKQHQLRSLS SRELGSGVNG VVGSPVNSWT KWGSPNGKLD WAVHGDELGQ FKRSSSFELG  660
TNGEEPDLSW VQSLVKESPP EIKEKLAIPT SATAASSSEA SKSNSQVEAI DHSVLGAWLE  720
QMQLDQLVA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010257241.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform X2
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1U7ZSI1	0.0	A0A1U7ZSI1_NELNU; zinc finger CCCH domain-containing protein 30-like isoform X2
STRING	XP_010257240.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]