PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007298-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 442aa    MW: 50581.1 Da    PI: 6.4649
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007298-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.38.5e-88754411365
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lLl  A+av++++l+ a + L +l   as +g++mqRlaayf+ +Laar + + s  ++ +  ++t+    +e++ a++ ++ vsP+++f+h+
  NNU_007298-RA  75 LIHLLLVSATAVDENNLNSAIENLVELYRVASLTGNSMQRLAAYFADGLAARHLTQRSPSFDMIMEEPTA----EEQFLAFTELYRVSPYYQFAHF 166
                    689*************************************************999888888877777775....678888999************* PP

           GRAS  97 taNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvak 184
                    taNqaI ea+e+e     + +H+iDfdis+G+QWp+L+q+L++++  +++ slRiTg g+    s ee+ et+ rL +f + + +++fef+ l  +
  NNU_007298-RA 167 TANQAIIEAFEKEekhnnRSLHVIDFDISNGFQWPSLIQSLSEKAtsDNQISLRITGYGR----SLEEVMETETRLVNFSKGChNLKFEFQGL-LR 257
                    ***********9977776778***********************9755667*********....9***************98648*******7.33 PP

           GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                           ++++ ++ + ++aVnlv+ lh+l  +s+++++    +Lkl  sl P vv++veqe +++  +Fl rf+++++y++a+fdsle  lpr+s
  NNU_007298-RA 258 -----GSKSIHPRKgDGTVAVNLVFYLHTLG-NSLQISD----TLKLAYSLDPSVVILVEQEGSRSPRNFLSRFVDSIHYFAAMFDSLEDCLPRDS 343
                    .....346677777688*************8.6666666....***************************************************** PP

           GRAS 280 eerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvk.sdgyrveee.sgslv.lgWk 363
                     er ++E+  lg+ei+++++ e+++ +++r e+le+W+ r+e+ GFk ++ls+k   qaklll+        +v+ + g+r+ e+ +g ++ lgW+
  NNU_007298-RA 344 AERLSIEKNHLGKEIKKMISYEKDDeHNQRYERLETWKGRMESHGFKGINLSSKSLIQAKLLLKirsncsllEVGgGGGFRIFERdEGRALsLGWQ 439
                    *********************9987699**********************************983332222233434568887653444445**** PP

           GRAS 364 dr 365
                    dr
  NNU_007298-RA 440 DR 441
                    98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.47349419IPR005202Transcription factor GRAS
PfamPF035142.9E-8575441IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MQEIDEKELL NLRLSVAEDS GGERKRQRRD DSNSLHPCEG YEGRIFRLLH KREQMLRLDP  60
RKEKMVDDDG KGLHLIHLLL VSATAVDENN LNSAIENLVE LYRVASLTGN SMQRLAAYFA  120
DGLAARHLTQ RSPSFDMIME EPTAEEQFLA FTELYRVSPY YQFAHFTANQ AIIEAFEKEE  180
KHNNRSLHVI DFDISNGFQW PSLIQSLSEK ATSDNQISLR ITGYGRSLEE VMETETRLVN  240
FSKGCHNLKF EFQGLLRGSK SIHPRKGDGT VAVNLVFYLH TLGNSLQISD TLKLAYSLDP  300
SVVILVEQEG SRSPRNFLSR FVDSIHYFAA MFDSLEDCLP RDSAERLSIE KNHLGKEIKK  360
MISYEKDDEH NQRYERLETW KGRMESHGFK GINLSSKSLI QAKLLLKIRS NCSLLEVGGG  420
GGFRIFERDE GRALSLGWQD RN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-51604402369Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256323.10.0PREDICTED: scarecrow-like protein 23
TrEMBLA0A1U7ZVT70.0A0A1U7ZVT7_NELNU; scarecrow-like protein 23
STRINGXP_010256323.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-56RGA-like 1