PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006794-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 728aa    MW: 80021.9 Da    PI: 7.3327
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006794-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.61.3e-1543821756
                   HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   +lF+++++p++++r eL+k+l L+ rqVk+WFqNrR+++k
  NNU_006794-RA 43 NLFKECPHPDEKQRMELSKRLCLESRQVKFWFQNRRTQMK 82
                   69***********************************999 PP
2START195.62.3e-612334572206
                    HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                    la++a++elvk+a++++ +W        e +n++e++q+f++  +     + +ea r++g+v+ ++  lve+l+d + +W e+++    + +t+ev
  NNU_006794-RA 233 LALAAMDELVKMAQSDKSLWLPGLeggkETLNQEEYMQTFPPCIGmkpsgFVTEATRETGMVIINSLALVETLMDAN-RWAEMFPcmiaRTSTTEV 327
                    6899*****************99999*9**************99999**9***************************.****************** PP

                    ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
          START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdl 172
                    +ssg       alqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d+    ++ ++ ++ +++lpSg+++++++ng+skv+wveh+++
  NNU_006794-RA 328 LSSGmggtrnCALQLMHAELQVLSPLVPiREVKFLRFCKQHAEGVWAVVDVSIDHILRETSnEPTFASCRRLPSGCVVQDMPNGYSKVIWVEHAEY 423
                    *******************************************************99888889********************************* PP

                    -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206
                    +++ +h+l+r+l++ g+ +ga++wvatlqrqce+
  NNU_006794-RA 424 DESAIHQLYRPLLRAGMGFGAQRWVATLQRQCEC 457
                    ********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.8E-63788IPR001356Homeobox domain
PROSITE profilePS5007113.7834284IPR001356Homeobox domain
CDDcd000864.25E-124284No hitNo description
SuperFamilySSF466895.13E-134284IPR009057Homeodomain-like
PfamPF000464.7E-134382IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.6E-154392IPR009057Homeodomain-like
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PROSITE profilePS5084843.152223460IPR002913START domain
SuperFamilySSF559614.12E-31225457No hitNo description
CDDcd088753.38E-121227456No hitNo description
SMARTSM002349.4E-41232457IPR002913START domain
PfamPF018521.7E-53233457IPR002913START domain
SuperFamilySSF559612.66E-25485721No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MRADLEAITW RALPVMIRTG TIHQGRRDTI DTPHSKSKSS RRNLFKECPH PDEKQRMELS  60
KRLCLESRQV KFWFQNRRTQ MKTQLERHEN TILRQENDKL RAENMSIREA MRNPICSNCG  120
GPAMLGDISL EEQHLRIENA RLKDELDRVC ALAGKFLGRP VSSLATPMPS SSLELAVGSN  180
GFGGMNPVAT TLPLVSDFVG GVSNTLPVVP QTRPTPGVTI LDRSLERSMF LDLALAAMDE  240
LVKMAQSDKS LWLPGLEGGK ETLNQEEYMQ TFPPCIGMKP SGFVTEATRE TGMVIINSLA  300
LVETLMDANR WAEMFPCMIA RTSTTEVLSS GMGGTRNCAL QLMHAELQVL SPLVPIREVK  360
FLRFCKQHAE GVWAVVDVSI DHILRETSNE PTFASCRRLP SGCVVQDMPN GYSKVIWVEH  420
AEYDESAIHQ LYRPLLRAGM GFGAQRWVAT LQRQCECLAI LMSSTVPARD HTAITPSGRR  480
SMLKLAQRMT DNFCAGVCAS AVHKWNKLCT GNVDEDVRVM TRKSVDDPGE PPGVVLSAAT  540
SVWLPVSPQR LFDFLRDERL RSEWDILSNG GPMQEMAHIA KGQDPGNCVS LLRASAMNAN  600
QSNMLILQET CFDASGSLVV YAPVDIPAMH VVMNGGDSAY VALLPSGFSI VPDGPGSRGP  660
TSNHHHGPLA NGNGSSQQRV GGSLLTVAFQ ILVNNLPTAK LTVESVDTVN NLISCTVQKI  720
KAALHCES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255501.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1U7ZN060.0A0A1U7ZN06_NELNU; homeobox-leucine zipper protein ANTHOCYANINLESS 2
STRINGXP_010255501.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]