PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005975-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 322aa    MW: 36466.4 Da    PI: 8.8372
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005975-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.6e-36101022103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    F+ k+y++++d++++++i w + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +g+k+ll++i
  NNU_005975-RA  10 FVLKTYQMVNDPATDSVIVWGRANNSFIVIDPIDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFAHELFLRGQKQLLRNI 96 
                    9********************999*****************************************999.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                     r+ks+
  NNU_005975-RA  97 VRRKSS 102
                    ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.8E-54699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-33699IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.5E-38799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.3E-181033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.0E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-184860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEAFNPVAPF VLKTYQMVND PATDSVIVWG RANNSFIVID PIDFSQRILP AYFKHNNFSS  60
FVRQLNTYGF RKVDPDKWEF AHELFLRGQK QLLRNIVRRK SSRNQYLMNQ PKQENGEERE  120
EEEEILMMEI GRLKQEQKAI EEELQGMNRR LQVTERRPQQ LLAFLFKVVE DPDLIGRIMQ  180
EKDTAKLVEA KKKRLISSAP SSSSAPTKTK MKKIEEVVQH GKAATPVPLQ GVGYCPWTTS  240
NTWPWLTGGP YLSQTPIVTP SSFTLTGVSS PSASGSATAT AMNSYQTDDS REYSDQMGSL  300
PEMEGSVQKP PPYPFSLFGG GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-27710217123Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254125.10.0PREDICTED: heat stress transcription factor C-1
TrEMBLA0A1U7ZLL20.0A0A1U7ZLL2_NELNU; heat stress transcription factor C-1
STRINGXP_010254125.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-76heat shock transcription factor C1