PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

NNU_005933-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HD-ZIP

Protein Properties

Length: 748aa MW: 82605.4 Da PI: 6.089

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_005933-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.6	6.7e-21	92	147	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+ q++e+e+lF+++++p++++r++L+k+lgL+ rq+k+WFqNrR++ k NNU_005933-RA 92 RKKYHRHTAGQIREMEALFKESPHPDENQRQQLSKQLGLDPRQIKFWFQNRRTQLK 147 79999***********************************************9877 PP
2	START	220.5	5.6e-69	264	485	4	206
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 ++a++e++++a+a+ep+Wv+s+ e++n+de++++f+ +++ +s+ea+r++gvv+ +l++lv+ ++d + qW+e+++ ka+t++vi NNU_005933-RA 264 NRALEEVNRMATAGEPLWVRSVetgrEILNYDEYIREFSVENSnsgrikRSIEASRETGVVFVDLPRLVQAFMDAN-QWKEMFPcmisKAATVDVI 358 68999*******************************8888799***************************.*************** PP CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS START 86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174 ++g ga+qlm+aelq+l+p+vp R++ f+Ry++ql+ ++++ivdvS+d +++ ++s+v+++++pSg++ie+ksngh+kvt veh ++++ NNU_005933-RA 359 CNGegvnrnGAVQLMFAELQMLTPMVPtREVCFIRYCKQLSPERFAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVTLVEHLECQK 453 *****************************************************98.9******************************* PP SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 175 rlphwllrslvksglaegaktwvatlqrqcek 206 +++h ++rs+v+sg a+ga++w+atlq qce+ NNU_005933-RA 454 STVHTMFRSIVNSGSAFGARHWMATLQLQCER 485 ****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-22	78	143	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-20	80	150	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.686	89	149	IPR001356	Homeobox domain
SMART	SM00389	1.7E-18	91	153	IPR001356	Homeobox domain
Pfam	PF00046	2.9E-18	92	147	IPR001356	Homeobox domain
CDD	cd00086	2.86E-16	96	147	No hit	No description
PROSITE pattern	PS00027	0	124	147	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	36.635	252	488	IPR002913	START domain
SuperFamily	SSF55961	3.16E-32	254	485	No hit	No description
CDD	cd08875	5.98E-111	256	484	No hit	No description
Gene3D	G3DSA:3.30.530.20	2.9E-5	258	479	IPR023393	START-like domain
SMART	SM00234	4.3E-72	261	485	IPR002913	START domain
Pfam	PF01852	2.5E-54	264	485	IPR002913	START domain
SuperFamily	SSF55961	3.98E-14	517	738	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MSNYPNSRTK DFFASPALSL TLAGVFRDVG TPAAASMEVE EGDEESGGGG GREDAVENSS 60 ENTGGPGKSD EDGDAEGEQD DDGDDGNKKK KRKKYHRHTA GQIREMEALF KESPHPDENQ 120 RQQLSKQLGL DPRQIKFWFQ NRRTQLKAIQ ERHENSLLKS EIDKLREENR TMRESTKKAC 180 CPNCGFATKE ATMTTDQEQR LRIENARLKA ELEKLRATVG KYPAGTASPS SSCSAGNDQQ 240 NRSSLDYYSC VFGLDKSRIM EMVNRALEEV NRMATAGEPL WVRSVETGRE ILNYDEYIRE 300 FSVENSNSGR IKRSIEASRE TGVVFVDLPR LVQAFMDANQ WKEMFPCMIS KAATVDVICN 360 GEGVNRNGAV QLMFAELQML TPMVPTREVC FIRYCKQLSP ERFAIVDVSI DKVEDNIDAS 420 LVKCRKRPSG CIIEDKSNGH CKVTLVEHLE CQKSTVHTMF RSIVNSGSAF GARHWMATLQ 480 LQCERIVFFM ATNVPTKDSS GVTTQAGRKS MLKLAQRMTG SFCRAVGASS FNTWAKISAK 540 GGDDIRVASR KNLNDPAEPL GVILCAVSSV FLPVSPHVLF DFLRDEAQRT EWDIMSTGGP 600 VQSIANIAKG KDRGNAVTVQ AMKSKESSVW VLQDSCTNAY ESMVVYAPVD IHGMQTVMSG 660 CDSSNIAILP SGFSILPDGL ETRSLVLTSK PDDEEKTMEG GSLLTVAFQI LAKSSPTAKV 720 TMESLETVNT LISCTLQNIK RSLQCEDG

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MSNYPNSRTK DFFASPALSL TLAGVFRDVG TPAAASMEVE EGDEESGGGG GREDAVENSS  60
ENTGGPGKSD EDGDAEGEQD DDGDDGNKKK KRKKYHRHTA GQIREMEALF KESPHPDENQ  120
RQQLSKQLGL DPRQIKFWFQ NRRTQLKAIQ ERHENSLLKS EIDKLREENR TMRESTKKAC  180
CPNCGFATKE ATMTTDQEQR LRIENARLKA ELEKLRATVG KYPAGTASPS SSCSAGNDQQ  240
NRSSLDYYSC VFGLDKSRIM EMVNRALEEV NRMATAGEPL WVRSVETGRE ILNYDEYIRE  300
FSVENSNSGR IKRSIEASRE TGVVFVDLPR LVQAFMDANQ WKEMFPCMIS KAATVDVICN  360
GEGVNRNGAV QLMFAELQML TPMVPTREVC FIRYCKQLSP ERFAIVDVSI DKVEDNIDAS  420
LVKCRKRPSG CIIEDKSNGH CKVTLVEHLE CQKSTVHTMF RSIVNSGSAF GARHWMATLQ  480
LQCERIVFFM ATNVPTKDSS GVTTQAGRKS MLKLAQRMTG SFCRAVGASS FNTWAKISAK  540
GGDDIRVASR KNLNDPAEPL GVILCAVSSV FLPVSPHVLF DFLRDEAQRT EWDIMSTGGP  600
VQSIANIAKG KDRGNAVTVQ AMKSKESSVW VLQDSCTNAY ESMVVYAPVD IHGMQTVMSG  660
CDSSNIAILP SGFSILPDGL ETRSLVLTSK PDDEEKTMEG GSLLTVAFQI LAKSSPTAKV  720
TMESLETVNT LISCTLQNIK RSLQCEDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	92	KKKKRK
2	87	93	KKKKRKK
3	89	93	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010254081.1	0.0	PREDICTED: homeobox-leucine zipper protein GLABRA 2-like
Swissprot	P46607	0.0	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A1U7ZLH1	0.0	A0A1U7ZLH1_NELNU; homeobox-leucine zipper protein GLABRA 2-like
STRING	XP_010254081.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]