PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_004785-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bZIP

Protein Properties

Length: 378aa MW: 41186.8 Da PI: 6.141

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_004785-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.6	3.6e-10	180	232	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + NNU_004785-RA 180 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 232 9****************************************999877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-16	176	240	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.691	178	241	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.5E-9	180	229	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.6E-8	180	234	No hit	No description
SuperFamily	SSF57959	9.85E-11	180	231	No hit	No description
CDD	cd14703	1.82E-23	181	230	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MEEQKADQSR RDMDNSQGAQ NAKATTPMLG TFRSSHHRRA HSEMNFRLPD DLDLAGDPFD 60 APTGSYEEIG SEDDIFSTYM DIEKLGSKIE DCSTGGATKL GDCRIDNAAC VGQNGGTGVG 120 GVAVECGGGD KNVRPRHRHS NSVDGSLISR GGESLFADTI EAKKAMAPDK LAELWAIDPK 180 RAKRILANRQ SAARSKERKA RYISELERKV QTLQTEATTL SAQLTLFQRD TTGLTTENTE 240 LKLRLQAMEQ QAQLRDALNE ALKQEVERLR IATGEVSSPG DALNLVMHHV QYSPSPFFCL 300 PQQPGSGGHQ SFQMPQFQPS QSNMGSHPLL ASQSHAFSEM LQQDPLGRLQ GLDINSRGSH 360 LVKSEGPSIS ASESSTTF

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MEEQKADQSR RDMDNSQGAQ NAKATTPMLG TFRSSHHRRA HSEMNFRLPD DLDLAGDPFD  60
APTGSYEEIG SEDDIFSTYM DIEKLGSKIE DCSTGGATKL GDCRIDNAAC VGQNGGTGVG  120
GVAVECGGGD KNVRPRHRHS NSVDGSLISR GGESLFADTI EAKKAMAPDK LAELWAIDPK  180
RAKRILANRQ SAARSKERKA RYISELERKV QTLQTEATTL SAQLTLFQRD TTGLTTENTE  240
LKLRLQAMEQ QAQLRDALNE ALKQEVERLR IATGEVSSPG DALNLVMHHV QYSPSPFFCL  300
PQQPGSGGHQ SFQMPQFQPS QSNMGSHPLL ASQSHAFSEM LQQDPLGRLQ GLDINSRGSH  360
LVKSEGPSIS ASESSTTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252066.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	1e-108	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A1U7ZEG4	0.0	A0A1U7ZEG4_NELNU; transcription factor RF2b-like
STRING	XP_010252066.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-103	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]