PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003667-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 627aa    MW: 71793.9 Da    PI: 5.3138
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003667-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73e-0689111427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    ++C f++  G+C+ G+rC+F Hg+
  NNU_003667-RA  89 VPCYFYFN-GFCNKGERCSFLHGR 111
                    69******.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.587635IPR000571Zinc finger, CCCH-type
SMARTSM003560.0066734IPR000571Zinc finger, CCCH-type
PfamPF156632.3E-12764No hitNo description
PROSITE profilePS5010310.5683763IPR000571Zinc finger, CCCH-type
SMARTSM003560.43962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.56885112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-685110IPR000571Zinc finger, CCCH-type
SMARTSM003560.003586111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-490112IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MEEEILKRNT DCVYFLASPL TCKKGVECEY RHSESARLNP RDCWYWLSGN CLNPTCAFRH  60
PPLDVHTEAP SESLTLPHQS SAPLSKNNVP CYFYFNGFCN KGERCSFLHG RNGMLPAWKS  120
SKTASVVSDA HPLENKTVTG SDILQAPIEA PPVPSGTTSK SMANVQFLPK EDQQSAPKEF  180
QPKQVLQLSG PKQFTPKQVN QQSVSKQFQP KEDLQQSAPN VSLDPSSSPE TSMPECDEAA  240
AKSDSPPPAE DLVESRSLLG QDQSSEEHVD DRIEPEEWWE SSPGFDVLVD DGSENMGYED  300
EPEYLMAHDS EARGLHNHLL QYDYEDPSGY DPSEYQETGI LYEQGIYDSY DRLEDDYTSY  360
HARRVSDLSK ERMLDPMFFR KRKILPREVG MDGQHSLDLR EHLTKHRRMD RRQVSYNPRR  420
RNSSRLNDRR RERPERHGMN SLMQGRLASE VGKDMIGLRN ENEIGPRDSH RRGWFRQSQS  480
RSTNRSRQHE KERRHPRSNF LPSEISRESK RCTQDSATFT GPKTLAQIKE EKRKARGTED  540
AFGISGQPSK MTSVDFQGPK SLSEILKDKR RAHLTSDDYS SSSLRDYNIE HEGNHNQLNE  600
EENDFVDDDE DDEDEDGFEK KIASICS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250030.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
TrEMBLA0A1U7Z9A60.0A0A1U7Z9A6_NELNU; zinc finger CCCH domain-containing protein 32-like
STRINGXP_010250030.10.0(Nelumbo nucifera)