![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_003667-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 627aa MW: 71793.9 Da PI: 5.3138 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3e-06 | 89 | 111 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f++ G+C+ G+rC+F Hg+ NNU_003667-RA 89 VPCYFYFN-GFCNKGERCSFLHGR 111 69******.*************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.587 | 6 | 35 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0066 | 7 | 34 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 2.3E-12 | 7 | 64 | No hit | No description |
PROSITE profile | PS50103 | 10.568 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.4 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.568 | 85 | 112 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 85 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0035 | 86 | 111 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 90 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 627 aa Download sequence Send to blast |
MEEEILKRNT DCVYFLASPL TCKKGVECEY RHSESARLNP RDCWYWLSGN CLNPTCAFRH 60 PPLDVHTEAP SESLTLPHQS SAPLSKNNVP CYFYFNGFCN KGERCSFLHG RNGMLPAWKS 120 SKTASVVSDA HPLENKTVTG SDILQAPIEA PPVPSGTTSK SMANVQFLPK EDQQSAPKEF 180 QPKQVLQLSG PKQFTPKQVN QQSVSKQFQP KEDLQQSAPN VSLDPSSSPE TSMPECDEAA 240 AKSDSPPPAE DLVESRSLLG QDQSSEEHVD DRIEPEEWWE SSPGFDVLVD DGSENMGYED 300 EPEYLMAHDS EARGLHNHLL QYDYEDPSGY DPSEYQETGI LYEQGIYDSY DRLEDDYTSY 360 HARRVSDLSK ERMLDPMFFR KRKILPREVG MDGQHSLDLR EHLTKHRRMD RRQVSYNPRR 420 RNSSRLNDRR RERPERHGMN SLMQGRLASE VGKDMIGLRN ENEIGPRDSH RRGWFRQSQS 480 RSTNRSRQHE KERRHPRSNF LPSEISRESK RCTQDSATFT GPKTLAQIKE EKRKARGTED 540 AFGISGQPSK MTSVDFQGPK SLSEILKDKR RAHLTSDDYS SSSLRDYNIE HEGNHNQLNE 600 EENDFVDDDE DDEDEDGFEK KIASICS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010250030.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like | ||||
TrEMBL | A0A1U7Z9A6 | 0.0 | A0A1U7Z9A6_NELNU; zinc finger CCCH domain-containing protein 32-like | ||||
STRING | XP_010250030.1 | 0.0 | (Nelumbo nucifera) |