PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002147-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 252aa    MW: 29038 Da    PI: 9.8083
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002147-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.55.4e-26958150
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                   k+ien + rqvtfskRrng+ KKA+ELSvLCd+++a+i+fs++gk+  +s
  NNU_002147-RA  9 KKIENPTSRQVTFSKRRNGLVKKAYELSVLCDVDIALIVFSPSGKVNLFS 58
                   68*******************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.128161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-29278IPR002100Transcription factor, MADS-box
CDDcd002651.70E-35275No hitNo description
PRINTSPR004044.4E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.9E-261054IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRVKLQIKK IENPTSRQVT FSKRRNGLVK KAYELSVLCD VDIALIVFSP SGKVNLFSGK  60
KRIEDVLSRY INLPEHERGR SFEGDALPIT TLREAVLQEY ILEEALRRVR ERKVFLPPQS  120
SNVNGFVTGN SNRVFDRFPP HFQRINSLDS SIGLLPERDY YQREHIAQFL PPSSTFIQVN  180
GMQPSVDRIN PHGRLEDAID LRHPEFRHAN LDHWRPESHP IGKELAYYAT NSTSVHTALY  240
INNDYNMRLS LA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-17177177MEF2 CHIMERA
6byy_B3e-17177177MEF2 CHIMERA
6byy_C3e-17177177MEF2 CHIMERA
6byy_D3e-17177177MEF2 CHIMERA
6bz1_A4e-17177177MEF2 CHIMERA
6bz1_B4e-17177177MEF2 CHIMERA
6bz1_C4e-17177177MEF2 CHIMERA
6bz1_D4e-17177177MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274370.11e-177PREDICTED: agamous-like MADS-box protein AGL104
TrEMBLA0A1U8BDF61e-176A0A1U8BDF6_NELNU; agamous-like MADS-box protein AGL104
STRINGXP_010274370.11e-176(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.17e-39AGAMOUS-like 104