PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001578-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 330aa    MW: 36233.9 Da    PI: 6.6804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001578-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-10207251655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    n+ +r RR+ri ++f  LrellP+      k  +Ka+ L  +++Y+k+Lq
  NNU_001578-RA 207 NITDRLRRARIGQGFKALRELLPHF-----KEGNKASLLDNVIDYVKYLQ 251
                    999*********************9.....579****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.89E-9199255No hitNo description
SuperFamilySSF474591.14E-12200262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-10200261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.351201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-8206251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-8207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MPMEQMSSTS GGLGAKVVNS YLSKNISNQH VVAERNENLP IAQPLPHWIY RQQPSHNQAN  60
FSPESSTEFC DIPARDVAAG VLSPVGSIQV DSSFDALKAR QLTHIVNGND PEASSSATVQ  120
HGKMDGENYN VPMAVHLRPL GEGEVENKLM DVENQNLSQN HASSKKESNE DTCNVFQPYP  180
EVTIAVSGSP SKLCGSVSRK RASSRSNITD RLRRARIGQG FKALRELLPH FKEGNKASLL  240
DNVIDYVKYL QFQIKVLSQS KLGGEAINAP LVHLEGYGHY LLNQQMLKEP LEEIMGRLME  300
VDMGKATQLL QSKGLAVIED SLAEKLFQAG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278373.10.0PREDICTED: transcription factor bHLH66-like isoform X1
RefseqXP_010278383.10.0PREDICTED: transcription factor bHLH66-like isoform X1
TrEMBLA0A1U8BMV50.0A0A1U8BMV5_NELNU; transcription factor bHLH66-like isoform X1
STRINGXP_010278373.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-25LJRHL1-like 2