PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

NNU_001408-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRF

Protein Properties

Length: 243aa MW: 25648.7 Da PI: 8.9244

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_001408-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.1	3.1e-23	96	140	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC ++v++++k+CErH+hrgr+ srk++e+ NNU_001408-RA 96 EPEPGRCRRTDGKKWRCTKDVVPDQKYCERHMHRGRKCSRKHVEA 140 69*****************************************97 PP
2	QLQ	58.3	2.3e-20	26	61	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L++Q+l++Ky++a++PvP +L+++i+k NNU_001408-RA 26 GFTFLQLQELEHQALIFKYMVAGVPVPVHLVLPIWK 61 69********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.6E-9	25	61	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.775	26	61	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.6E-14	27	60	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.087	96	140	IPR014977	WRC domain
Pfam	PF08879	2.2E-19	97	139	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MGAGSPSVGL GLGLGLGPGL SHGKSGFTFL QLQELEHQAL IFKYMVAGVP VPVHLVLPIW 60 KSVVSSYGGV NGGIYQHYPS FLGCTSLCLD YRNSMEPEPG RCRRTDGKKW RCTKDVVPDQ 120 KYCERHMHRG RKCSRKHVEA SQGGATPPCA AAAASSVNAT TSKTNNDSLN SNTNLSISIP 180 ANLELTTTTT TTNTNTNNNN DVSGSNTSNN ISNSNAGINV SPSLGFSPKS VLQSGTCKTD 240 SSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276023.1	1e-180	PREDICTED: growth-regulating factor 10
Swissprot	Q6AWX7	3e-53	GRF12_ORYSJ; Growth-regulating factor 12
TrEMBL	A0A1U8BHC9	1e-179	A0A1U8BHC9_NELNU; growth-regulating factor 10
STRING	XP_010276023.1	1e-179	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	3e-32	growth-regulating factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]