PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00884.1.p
Common NameMIMGU_mgv1a018141mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NAC
Protein Properties Length: 279aa    MW: 31539.6 Da    PI: 8.1999
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00884.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.81.1e-3228054128
               NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+    + +l g+kktLvfykgrap+gekt+Wvmheyrl
  Migut.O00884.1.p   2 GEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSSssggGAQLLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 80 
                       578**************************************988877788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.2741102IPR003441NAC domain
SuperFamilySSF1019415.23E-372102IPR003441NAC domain
PfamPF023654.2E-15680IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGEREWYFFS LRDRKYPTGL RTNRATGAGY WKATGKDREV YSSSSGGGAQ LLGMKKTLVF  60
YKGRAPRGEK TKWVMHEYRL DGDFSCRHTC KEEWVICRII HKMGEKKSQT MLQSQQQISN  120
NYSLPPLLEP PVIMQTLNQN DDAFTQESDH LKTLINPLLV DHLFPVNSLN PIATSSASFA  180
NQDFTYKELS CAITKKCKKE ANFEFHDGFN NNNMRWVEEN SNKYYPNPFL FGSGGGGEMG  240
VPLTPGATVG GIDDNNVTAM DTAAIYHVMS TEPAFRWW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-30110268165NO APICAL MERISTEM PROTEIN
1ut4_B7e-30110268165NO APICAL MERISTEM PROTEIN
1ut7_A7e-30110268165NO APICAL MERISTEM PROTEIN
1ut7_B7e-30110268165NO APICAL MERISTEM PROTEIN
3swm_A8e-30110271168NAC domain-containing protein 19
3swm_B8e-30110271168NAC domain-containing protein 19
3swm_C8e-30110271168NAC domain-containing protein 19
3swm_D8e-30110271168NAC domain-containing protein 19
3swp_A8e-30110271168NAC domain-containing protein 19
3swp_B8e-30110271168NAC domain-containing protein 19
3swp_C8e-30110271168NAC domain-containing protein 19
3swp_D8e-30110271168NAC domain-containing protein 19
4dul_A7e-30110268165NAC domain-containing protein 19
4dul_B7e-30110268165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00884.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847813.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8514e-61NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A022QL100.0A0A022QL10_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.19e-60NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]