PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 207aa MW: 23078.1 Da PI: 7.0687

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.O00815.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.1	1.8e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck+lrr+CakdCv+apyfp ++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ + Migut.O00815.1.p 7 PCASCKLLRRRCAKDCVFAPYFPPDDPHKFAIVHKVFGASNISKMLQELPVQQRGDAVSSLVYEANARMRDPVYGCVGAISYLQNQVSQLQMQ 99 7****************************************************************************************** PP DUF260 94 lallkee 100 la++++e Migut.O00815.1.p 100 LAVAQAE 106 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.691	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-44	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MAGGTSPCAS CKLLRRRCAK DCVFAPYFPP DDPHKFAIVH KVFGASNISK MLQELPVQQR 60 GDAVSSLVYE ANARMRDPVY GCVGAISYLQ NQVSQLQMQL AVAQAEILCI QMQQNHDDNH 120 MIVPLLPASN YCPQLDDIII SDKSHLLFAT NYNNNHNLII NNNINNNNNN NNNLQQYYLS 180 FANNSTSSSS TNNVMQDPLK RESLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	3	108	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	3	108	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.O00815.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012844404.1	1e-112	PREDICTED: LOB domain-containing protein 12-like, partial
Swissprot	Q8LBW3	1e-74	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A022QW89	1e-150	A0A022QW89_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-74	LBD family protein

Link Out ? help Back to Top
Phytozome	Migut.O00815.1.p

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]