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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.O00403.1.p | ||||||||
Common Name | MIMGU_mgv1a021897mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 245aa MW: 26714.8 Da PI: 4.9005 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 130.9 | 4.2e-41 | 63 | 154 | 2 | 93 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 re d+++Pian++ri+++vlP++a i++dake +qecvsefisf+t+ea+ +c+++ r+t++++d+l a+a+lGfedy+e+l+v+l+++r Migut.O00403.1.p 63 READEYMPIANITRILRRVLPTHAEIADDAKEAIQECVSEFISFITAEANRRCRQDYRRTVTPEDVLAAMASLGFEDYLESLTVFLNNHRTQ 154 799*************************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.4E-41 | 56 | 164 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.42E-32 | 66 | 167 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-21 | 69 | 132 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.2E-13 | 96 | 114 | No hit | No description |
PRINTS | PR00615 | 5.2E-13 | 115 | 133 | No hit | No description |
PRINTS | PR00615 | 5.2E-13 | 134 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MEKGGSSNIG YKYTRRARTS GIVIREGGAA RAAATATNAA NIAGPTLNVV AEEVNQEQQG 60 FKREADEYMP IANITRILRR VLPTHAEIAD DAKEAIQECV SEFISFITAE ANRRCRQDYR 120 RTVTPEDVLA AMASLGFEDY LESLTVFLNN HRTQQDPERG SRNQISQIVR RDGGVGVGFL 180 HHQQPQGAPT VRPPPPPPLA APTMGYYVPL PPPVAATMED EEEFGGLSKV TNEFGGGEEF 240 DPFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-39 | 63 | 152 | 7 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.O00403.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838634.1 | 1e-124 | PREDICTED: uncharacterized protein LOC105959133 | ||||
TrEMBL | A0A022QBY0 | 1e-179 | A0A022QBY0_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6044 | 4 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 2e-43 | NF-YB family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.O00403.1.p |