PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

NAC

Protein Properties

Length: 244aa MW: 28274.4 Da PI: 4.5699

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.O00243.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.7	3.2e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++ Migut.O00243.2.p 6 LPPGFRFHPTDEELVNYYLKRKIQGQEIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRR 97 79**************************.99**********84335556888******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v s +++++g+kktLv+y+grap+g +tdWvmheyrl Migut.O00243.2.p 98 VNS-QNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133 .8999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-64	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.233	6	156	IPR003441	NAC domain
Pfam	PF02365	2.2E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKIQG QEIELDIIPE VDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVNS QNRAIGMKKT LVYYRGRAPQ 120 GIRTDWVMHE YRLDDKEWED TSGIQDSYAL CRVFKKNGLC PEVEDQGQSS NNISLLDYTQ 180 GITNEHETLS PDFPVTSSSN ICMEEEDKDD KDDSWMQFIT DDVWCSSTTP FGGDEISQMA 240 FIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-55	2	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.O00243.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012855689.1	0.0	PREDICTED: NAC domain-containing protein 86 isoform X2
Swissprot	Q9FFI5	3e-88	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A022Q6W9	1e-158	A0A022Q6W9_ERYGU; Uncharacterized protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-121	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Migut.O00243.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]