PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.O00138.1.p
Common NameLOC105974961, MIMGU_mgv1a023370mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 181aa    MW: 19587 Da    PI: 8.2084
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.O00138.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.22.8e-4311109199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrrkC+++C+++ yfp e+p+kfanvhk+FGasnv kll++l +++r+da++sl+yeAear+rdPvyG+vg i+ lq+q+++l++e
  Migut.O00138.1.p  11 PCAACKFLRRKCTAGCIFSGYFPPEEPQKFANVHKIFGASNVAKLLNDLLPHQRDDAVQSLAYEAEARVRDPVYGCVGAISFLQRQVDRLQKE 103
                       7******************************************************************************************** PP

            DUF260  94 lallke 99 
                       l+++++
  Migut.O00138.1.p 104 LDAANA 109
                       *99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.38910111IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-4211108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MASSSSTYNP PCAACKFLRR KCTAGCIFSG YFPPEEPQKF ANVHKIFGAS NVAKLLNDLL  60
PHQRDDAVQS LAYEAEARVR DPVYGCVGAI SFLQRQVDRL QKELDAANAD LIRLAAASSP  120
SVHMPPPPPH QRPAEFGRRF GNDGGGGGRF YQTPGYQITY NASPWADIYN PHGGGFDGNI  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-591111511115LOB family transfactor Ramosa2.1
5ly0_B2e-591111511115LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.O00138.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855577.11e-133PREDICTED: LOB domain-containing protein 25 isoform X1
SwissprotQ9FML49e-67LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A022Q6M11e-131A0A022Q6M1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.45e-63LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]