PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.O00093.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB | ||||||||
Protein Properties | Length: 390aa MW: 44648.5 Da PI: 5.2069 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.5e-17 | 171 | 217 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd l+++v+++G + W++Ia+t+ gR +kqc++rw+++l Migut.O00093.1.p 171 KGQWTIEEDRTLIHLVEKYGVRKWSRIAQTLK-GRIGKQCRERWHNHL 217 799****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 223 | 265 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+eEd +l++a+ + G++ W+ Ia++++ gRt++++k++w+ Migut.O00093.1.p 223 KDQWTEEEDRILIEAHGEIGNK-WAEIAKRLP-GRTENSIKNHWN 265 678*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.396 | 166 | 221 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-14 | 170 | 219 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.18E-31 | 171 | 264 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-15 | 171 | 217 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 172 | 225 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.02E-13 | 174 | 217 | No hit | No description |
SMART | SM00717 | 1.6E-16 | 222 | 270 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.013 | 222 | 272 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.5E-16 | 223 | 265 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.53E-13 | 226 | 268 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 226 | 271 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MESATNSVND HYAPPPPLSL FNNTLKLETL DYDNETDFCM DNNFCMASFD PFDPFVSAFS 60 SSNSVFDLHE FKNYEENGIT STTTCTYNNF QGDGFLNFPN TKDMLMMEIE TSFLNCGNDN 120 NNNPKPPLGL LSVPDESSAD NFGTKRNRNN SNIINPKNKR NSNAKKSKSA KGQWTIEEDR 180 TLIHLVEKYG VRKWSRIAQT LKGRIGKQCR ERWHNHLRPD IKKDQWTEEE DRILIEAHGE 240 IGNKWAEIAK RLPGRTENSI KNHWNATKRR QFSRRKCRTK WPRPSSLLQN YIKSLNFDNK 300 SSASSRNNNN NNNNINSPII EPTNHGLGLD NASLNSVMEE GSFVQMPEFD DVVDFDFDED 360 RMSIGSFMDD IGDEPCFDLE LPFDMPPLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 9e-48 | 171 | 271 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 9e-48 | 171 | 271 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.O00093.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012855590.1 | 0.0 | PREDICTED: transcription factor MYB98-like | ||||
TrEMBL | A0A022Q6H8 | 0.0 | A0A022Q6H8_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 4e-73 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Migut.O00093.1.p |