PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N03235.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 717aa    MW: 80538.5 Da    PI: 9.5711
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N03235.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06210233327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       t +Cr+fa  G C++G++C+F H++
  Migut.N03235.1.p 210 TQICRDFAS-GGCRRGSQCRFFHPK 233
                       889******.*************96 PP
2zf-CCCH18.24.6e-06272293426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C++f + G C+ Gd+C+F+H 
  Migut.N03235.1.p 272 VPCKDFVK-GNCRWGDTCRFSHH 293
                       59******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.3E-5207233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5207232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854207234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-6210232IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-5210233IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4268294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15268295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5269293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4273293IPR000571Zinc finger, CCCH-type
SMARTSM003560.0067319344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328319345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MGERRKRRSM WDMEEETKHF SDMSKHNSSM GKDHRSNHDG GRYRQFSASG TYAAQTSRDH  60
SGQQSWESTE ENSVAPMNGR FSKSRQNGPE RKELGGGNRY YQEMSPGLDG MEPHKYNHSL  120
ENDRSHALSH RNMGRARSRS RSRSMPRGRS RSRSLSRGRG RERGRGRSRS RSRSPSDSAV  180
RVQTRSRSPT GDYRHQSHAW NDRSAPNKST QICRDFASGG CRRGSQCRFF HPKSTSGDRD  240
HISNSSYSRG DDVSDPYHGQ SEQFQNKSRS AVPCKDFVKG NCRWGDTCRF SHHFASDESF  300
GKGTRYKSFD NDIELEPCKN GKPVCKYFAA GNCDRDNCRF SHEGPKPKGQ EDRRGYGREV  360
GTSEAIRNEN TANEQEDLIL HGLQLQTQDV NSDILGQNKL LDDQSFPMTA WQQNVSPVPR  420
IQQQNHGLVE NNLVSSSFRS EVLDEAKDFR NTTNPIFFSG QNLNHQNSEN VFPGQSSVLS  480
ETDGGKNMLG PNPLNGFGSD LSGSETHLAV RLSLQNLHKA VQMTGMLETE VPQFFPTLLA  540
SQDSAPPTKS PVCDEQENHT ERKNGGEPDN LKVELSGSPK LKQEKVLGNA ELNEGNRGDG  600
DESKGFQNNK QSETVDGHGK VEESTTNKDD KGIRIFKNSL VEFVKDLLKP TWKEGKMSRE  660
AHKTIVKKVV DKVTSTIQAD QIPKTQEKIE QYLSYSKPKI AKLVQAYVGR CSKKDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162172RGRGRSRSRSR
2164172RGRSRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N03235.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853372.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
RefseqXP_012853373.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
RefseqXP_012853374.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
TrEMBLA0A022Q5890.0A0A022Q589_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.19e-14C3H family protein