PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.N03228.1.p | ||||||||
Common Name | MIMGU_mgv1a002587mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 658aa MW: 72212.5 Da PI: 6.5298 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 97.7 | 1e-30 | 63 | 150 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+km+e gf+r+pk+Ckek+en+ k++k++k+g+++++ +t+++fdqlea Migut.N03228.1.p 63 RWPRQETLALLKIRSEMDVTFRDSSLKGPLWEEVSRKMAELGFQRNPKKCKEKFENVYKYHKRTKDGRSSKSdGAGGKTYRFFDQLEA 150 8*********************************************************************96356779********85 PP | |||||||
2 | trihelix | 105 | 5.4e-33 | 470 | 555 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++++ k+plWee+s++m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a Migut.N03228.1.p 470 RWPKAEVEALIKLRTNLDIKYQENGPKGPLWEEISSAMAKIGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 555 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0062 | 60 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.6E-19 | 62 | 151 | No hit | No description |
PROSITE profile | PS50090 | 6.888 | 62 | 120 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.99E-26 | 62 | 127 | No hit | No description |
PROSITE profile | PS50090 | 7.909 | 463 | 527 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-5 | 463 | 526 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-4 | 467 | 529 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 6.0E-23 | 469 | 556 | No hit | No description |
CDD | cd12203 | 6.69E-27 | 470 | 534 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 658 aa Download sequence Send to blast |
MMLGVSGLMG SSGDGAAAAE AHESGGASGG SSEVGASSSI PGGGGGMEES ERSGGGGGGG 60 GNRWPRQETL ALLKIRSEMD VTFRDSSLKG PLWEEVSRKM AELGFQRNPK KCKEKFENVY 120 KYHKRTKDGR SSKSDGAGGK TYRFFDQLEA LENTTTTTPP PPHLFTTAAA PPPPRPPPLM 180 LTSSTAAAAA ALPMPPTVSS SNIIPANINN NPIINSSSFQ PSSGQPPPLQ HHLPPPPQPP 240 PSSNTIIPPQ GHAFQHSGGR PHMMPTRQLS DSTSNSSTSS DEDIQRRRRG RKRKWKDFFE 300 RVMKDVINKQ EDLQKRFLDT LEKRERDRTA REDAWRLQEI TRLNREHDLL VQERSIAAAK 360 DAAVISFLQK VTDQHNLQIP IANIFTAPPP PPPQVPPVQI QPPQIPQPPR QQQPPSMQLS 420 TIPPQPQQPT APPTTKPAVA APPAKIMDIV IADNGGGGDN SMSSAASSSR WPKAEVEALI 480 KLRTNLDIKY QENGPKGPLW EEISSAMAKI GYNRSSKRCK EKWENINKYF KKVKESNKKR 540 PEDSKTCPYF HQLDAIYRER GSKTDVVSFP GYGLNPDDNN PMMLPPPIMA RPEQQWPLPP 600 DEQRQQPDQF QDNESDHDEE EDDGDGDEDD EEDEAQCFEI VTNKQQSSVT TTTNAAD* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 287 | 293 | RRGRKRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.N03228.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853467.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A022QBD2 | 0.0 | A0A022QBD2_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76880.1 | 3e-51 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.N03228.1.p |