 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Migut.N03139.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 368aa MW: 41344.6 Da PI: 10.321 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Migut.N03139.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 338.2 | 2.1e-103 | 1 | 343 | 1 | 294 |
GAGA_bind 1 mdddgsre..rnkg.yye....paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalll 86
mdd+g+re r+k+ + + +++s+k q+m +aerda+i+ernla+sekk a+aerdma lqrd+a+aern+a++erdn++++l++
Migut.N03139.1.p 1 MDDSGHREngRHKPpQGQwlmqQQPSMK-----QIMGFMAERDAAIQERNLAISEKKTALAERDMAILQRDSAIAERNNAIMERDNAIATLQY 88
9999998878888732223332335555.....************************************************************ PP
GAGA_bind 87 vensla......salpvgvqvlsgtksidslqqlse............pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
+en+++ s +p+g+q+ +g+k++++ qq+++ +++++s+++ ++++ +++++++++ + + ++p +
Migut.N03139.1.p 89 RENAINssnnnmSPCPPGCQIPRGVKHMHHPQQHQQqqqqhihhhhhqSHMAESPYNNNNNSSNNNNNTRDNM-----------QMSDTVPIS 170
***998888988899***************9995552333444444443333333333322222222222222...........223334444 PP
GAGA_bind 162 kkakkkkkksekskkkvkkesader........................................skaekksidlvlngvslDestlPvPvCs 214
+ a +++k++++++ k++k+ a k ++k++dl+ln+v++Dest+PvPvCs
Migut.N03139.1.p 171 PVAPEPTKTRRAKRAKEAKPAATAAprkasknskrvkreednnlndlnnlnkavfgkshdmelggPKLDWKDQDLGLNQVAFDESTMPVPVCS 263
4444444444444333333333211234555555666666778899*********************************************** PP
GAGA_bind 215 CtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGt 294
CtG lr CYkWGnGGWqS+CCtt++S+yPLP+++++r+aR++grKmS++af+kl+++LaaeG+dlsnpvDLkdhWAkHGt
Migut.N03139.1.p 264 CTGFLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARVGGRKMSGSAFNKLISRLAAEGHDLSNPVDLKDHWAKHGT 343
*******************************************************************************9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MDDSGHRENG RHKPPQGQWL MQQQPSMKQI MGFMAERDAA IQERNLAISE KKTALAERDM 60
AILQRDSAIA ERNNAIMERD NAIATLQYRE NAINSSNNNM SPCPPGCQIP RGVKHMHHPQ 120
QHQQQQQQHI HHHHHQSHMA ESPYNNNNNS SNNNNNTRDN MQMSDTVPIS PVAPEPTKTR 180
RAKRAKEAKP AATAAPRKAS KNSKRVKREE DNNLNDLNNL NKAVFGKSHD MELGGPKLDW 240
KDQDLGLNQV AFDESTMPVP VCSCTGFLRP CYKWGNGGWQ SSCCTTNLSM YPLPAVPNKR 300
HARVGGRKMS GSAFNKLISR LAAEGHDLSN PVDLKDHWAK HGTIATSLSN RKKKKKIHHL 360
MLMQDKK*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
