PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N03131.1.p
Common NameLOC105958945, MIMGU_mgv1a010000mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family DBB
Protein Properties Length: 326aa    MW: 36116.2 Da    PI: 6.7642
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N03131.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.7e-07443538
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                       C+ +e+ e++ fC  ++  lC++C    H+       H+
  Migut.N03131.1.p  4 QCDVCEKDEASVFCVADEASLCATCDHRVHHAnklagkHQ 43
                      7******99******************9964446666665 PP
2zf-B_box29.22e-095593238
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                      +++ C+ ++e ++ lfC++++  lC++C   +H+   Ht
  Migut.N03131.1.p 55 SPPLCDICQERKALLFCQQDRAILCRECDIPIHNAneHT 93
                      5789******99*********************668866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.779147IPR000315B-box-type zinc finger
CDDcd000211.20E-5347No hitNo description
SMARTSM003366.6E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.85554101IPR000315B-box-type zinc finger
SMARTSM003367.9E-1654101IPR000315B-box-type zinc finger
PfamPF006435.7E-85694IPR000315B-box-type zinc finger
CDDcd000213.00E-1057101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKIQCDVCEK DEASVFCVAD EASLCATCDH RVHHANKLAG KHQRFTLHHP SPKQSPPLCD  60
ICQERKALLF CQQDRAILCR ECDIPIHNAN EHTKKHTRFL LTGVKLSATC TLYSESYPTE  120
SASSSLTNSS AVSNVNARDS NCTPSNAKGA TVQSRPQEPC ADKTNVVDQL NMNMSMSVSM  180
SNGSIIPASS ISEYLIETLP GWHVEDFLDS PSPSPYAFCK SGENDLVSPF WNDDVHQINN  240
NSRERMGFWV PQAPPPLHNN QSIDLAFGLP NNGFRQLQQQ SDEFINCNNT TKSSTRKRSD  300
DNSFAVPQIS PPPSNNTNKK SRTFW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N03131.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838399.10.0PREDICTED: B-box zinc finger protein 20-like
SwissprotQ9LQZ79e-83BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A022R8R50.0A0A022R8R5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-78salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]