|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Migut.N03130.1.p |
Common Name | DEF, LOC105959559, MIMGU_mgv1a012867mg |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
Family |
MIKC_MADS |
Protein Properties |
Length: 238aa MW: 27475.2 Da PI: 9.627 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Migut.N03130.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 92.2 | 2.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvt+skRrng++KKA+EL vLCda+v+++++sst+kl+ey+s
Migut.N03130.1.p 9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKVSILMISSTQKLHEYIS 59
79***********************************************86 PP
|
2 | K-box | 87.3 | 3e-29 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93
yqk+ g++++++++e++q++l+kLk+ ++nL++e+R+++Ge+L++L ++++ +L +++++sl+ iR+kK++ + +qi++++kk ++++e+n++
Migut.N03130.1.p 71 YQKAVGVDVWNTHYERMQEHLKKLKDVNRNLRTEIRQRIGESLNDLGYEQMVNLIEEIDNSLTIIREKKYKAISSQIDTSKKKLRNVEEINRN 163
799999*************************************************************************************** PP
K-box 94 Lrkkle 99
L +++
Migut.N03130.1.p 164 LVLEFD 169
*87765 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.272 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.35E-37 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 2.0E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.76E-36 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.2E-17 | 82 | 166 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.365 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKVSILMISS TQKLHEYISP 60 SITTKQMFDQ YQKAVGVDVW NTHYERMQEH LKKLKDVNRN LRTEIRQRIG ESLNDLGYEQ 120 MVNLIEEIDN SLTIIREKKY KAISSQIDTS KKKLRNVEEI NRNLVLEFDA RQEDPHYGLV 180 ENEGDYNSLL GFPNGGPRII ALRLPHNHHP HHHHHHHHPG LHSGGGGSDL TTFALLE*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AY524020 | 0.0 | AY524020.1 Mimulus guttatus deficiens (DEF) mRNA, DEFB paralog, complete cds. |
Publications
? help Back to Top |
- Schwarz-Sommer Z, et al.
Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development. EMBO J., 1992. 11(1): p. 251-63 [PMID:1346760] - Sommer H, et al.
Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors. EMBO J., 1990. 9(3): p. 605-13 [PMID:1968830] - Aagaard JE,Olmstead RG,Willis JH,Phillips PC
Duplication of floral regulatory genes in the Lamiales. Am. J. Bot., 2005. 92(8): p. 1284-93 [PMID:21646149] - Gallois JL, et al.
Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana. Gene, 2013. 526(2): p. 299-308 [PMID:23747397] - Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
Multiple interactions amongst floral homeotic MADS box proteins. EMBO J., 1996. 15(16): p. 4330-43 [PMID:8861961]
|